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The map label for this gene is ybfI [H]

Identifier: 238894178

GI number: 238894178

Start: 2082160

End: 2083149

Strand: Direct

Name: ybfI [H]

Synonym: KP1_2138

Alternate gene names: 238894178

Gene position: 2082160-2083149 (Clockwise)

Preceding gene: 238894174

Following gene: 238894179

Centisome position: 39.67

GC content: 62.02

Gene sequence:

>990_bases
GTGCCCCGGGCTGGCCAGCATTCGGCGGCGCCCTTTGCGCATACTGCATGGAACTCCTTCATTCTATGCGTAATTTCAGT
AAACGCCCAGCGGCAGGATGCGAACGGCGAGCGGGTTGGTGATGTTAATTTTTTGTGTAATAGTGCTGGAATCACCCCTC
AAGAACGTCGCAGGTTATCCATTATGTCTCAGCAGCAGAGCGCGGACTGGGTCAGGCTGGCGCAATCGCCCAGCCGGACG
GAACGCATCGAAGCCTTCTTCGGCGGCCACGGCTATGAGCCGCACCGGCATGATACCTACGCCATCGGCCAGACGATCGC
CGGCGTGCAGAGCTTTCACTATCGCGGCGGACTCCAGCACAGCCTGCCCGGCGGAACGATGGTGCTTCATCCGGACGAAA
TACACGATGGCGAGGCGGGCACCGAGGCGGGGTTTCACTACCGCATGGTTTATATCGAACCGGCGCTGATCCAGAAGATA
CTCGGCGGCAGGCCACTACCGTTTATCCCCGACGGCTTGTCGGCGGATCCACGGCTACGTCGCGCCGCGCAGCCGCTGTT
GAAAGCGGTCACGGATACCTTCGAGCCGCTGGAGGAAGAGGATGCTCTGTACGACCTGGCGCAGACCCTGGCCGTTGTCG
GCGGCCAACGTTCCCGTCGCCAGGCGTTTGATTATCAGGCGGCGGAGAGGGCCCGGGAGTATATTCATGCCTGTTTTATG
CAGGATATGACCCTCGACACCCTGTCGCAGGTCAGCGGCCGGGACCGCTGGAGCCTGAGCCGGGATTTCAGAACGCTGTA
CGGCACCAGCCCGTGGCGTTACGTCATGATGCGTCGGCTCGATTTTTGCCGCCAGCGGATGCGCGCCGGGGAACGTCTGG
TGGATATTGCCGCCGACGCGGGCTTTGCCGACCAGAGCCACATGACGCGCCAGTTTATCAGCCGCTTTGGCCTCTCTCCG
GGGCGCTGGCTGCGGGCTATCCGCGGATAA

Upstream 100 bases:

>100_bases
TGGCTGTTCTCCCTAGCATTTTCGATAGTAGTCTGACGCTCATTATATACGCAAAATATAAACGGCTGTTAAATAAAGCT
TTTTATAAAAAGGGCCCCTG

Downstream 100 bases:

>100_bases
GGCGGCGCAGGTTGCACAATCGTTCAAGCGTCAACGCGGCGAGGCGAACTATGCTGACTGCCTTTATCATAAGGAGACAG
CCCATGTTTCAACTCGTTAA

Product: putative helix-turn-helix AraC-type trancriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MPRAGQHSAAPFAHTAWNSFILCVISVNAQRQDANGERVGDVNFLCNSAGITPQERRRLSIMSQQQSADWVRLAQSPSRT
ERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKI
LGGRPLPFIPDGLSADPRLRRAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFM
QDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAGFADQSHMTRQFISRFGLSP
GRWLRAIRG

Sequences:

>Translated_329_residues
MPRAGQHSAAPFAHTAWNSFILCVISVNAQRQDANGERVGDVNFLCNSAGITPQERRRLSIMSQQQSADWVRLAQSPSRT
ERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKI
LGGRPLPFIPDGLSADPRLRRAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFM
QDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAGFADQSHMTRQFISRFGLSP
GRWLRAIRG
>Mature_328_residues
PRAGQHSAAPFAHTAWNSFILCVISVNAQRQDANGERVGDVNFLCNSAGITPQERRRLSIMSQQQSADWVRLAQSPSRTE
RIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKIL
GGRPLPFIPDGLSADPRLRRAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFMQ
DMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAGFADQSHMTRQFISRFGLSPG
RWLRAIRG

Specific function: Positive Regulator Of Tyna/Maoa And Feab/Pada, The Genes For 2-Phenylethylamine Catabolism. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37152; Mature: 37021

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAGQHSAAPFAHTAWNSFILCVISVNAQRQDANGERVGDVNFLCNSAGITPQERRRLS
CCCCCCCCCCCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHH
IMSQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQH
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
SLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLR
CCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHH
RAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADA
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
GFADQSHMTRQFISRFGLSPGRWLRAIRG
CCCCHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
PRAGQHSAAPFAHTAWNSFILCVISVNAQRQDANGERVGDVNFLCNSAGITPQERRRLS
CCCCCCCCCCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHH
IMSQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQH
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
SLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLR
CCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHH
RAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADA
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
GFADQSHMTRQFISRFGLSPGRWLRAIRG
CCCCHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]