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The map label for this gene is kdgT1 [H]

Identifier: 238894160

GI number: 238894160

Start: 2062539

End: 2063558

Strand: Direct

Name: kdgT1 [H]

Synonym: KP1_2117

Alternate gene names: 238894160

Gene position: 2062539-2063558 (Clockwise)

Preceding gene: 238894159

Following gene: 238894161

Centisome position: 39.3

GC content: 55.2

Gene sequence:

>1020_bases
ATGAATATTAATATACTTGAAAAAATGAATAAGGTGCCCGGTGGGTTAATTATTATTCCACTGCTGGTGGCTATATTAAT
TAATACTTTCGCGCCCCAGGTGCTCAGCATTGGCGGCCCGACCACCGCCTTATTTAAAGTCGGTTCCAGCGCCATGATGG
GCATATTTTTGCTCATTTGCGGAACCTCGATCAATATCCGTCAGGCCGGGTTGCCGCTCTATAAAGGCGCCGTGCTGCTG
TTTCTCAAATGTCTGGCCGGGGCACTGGCGGTATGGGTTGCGGGAACGTTGTTTGGCCCGAGCGGTTTTCTCGGAATATC
GACCCTGGCGCTGATTGCCTGCCTGACCAGCTCGAACAGCTCCCTCTATATCGCATTGTGCAGCAACTATGGCGATGCCA
GTGATGCCGGGGCGATCTCCGTATTCTGCATCAAGGATGGTCCGTTTGTTACCATGATGGTGCTGGGCGTCAGCGGCCTG
GCCAATATTCCCTTCGCCGCGCTGCTGTCGATGCTGATCCCACTGCTGATTGGCATGCTGTGGGGCAATCTGGACGAACG
CTTTAAACAGTTATGCGCTGCGGCGCAGCCGCTGGTGATCATTATTATGTCGTTCGCCATCGGCGCCAACTCCAGTATCA
ATACGGTGTTCACCGCCGGGCTGTCCGGGATCCTGTTGGGGATTATCTCCGCGCTAACCGGGATTGTGTTCTACTTTATC
TACAACCTGTTTTTGAAGAAGAAAAGTGCGCTGGGCGCCGCGCTGGGAACCACCGCCGCCAGCTCGGCGCTGACGCCGGC
GATGGTTGCCCAGGCGGATCATTCGCTGGCGATGTACGTGGATGCCGCCACCGCGCAGCTGGCGACGGCGAGCATTATCA
CCATGATCACCGCGCCGATACTGGTCGCCTGGTTTGATAAACGGCTGAAAAAGCGTGCGCCAGCCGCTGAACCGCTGAAA
GAGGTGAAAAGTGAAGAGAGCGTGACATTATCTTCCCCTGCCGCCAAAGGACACAAATAG

Upstream 100 bases:

>100_bases
AGCAATAACCCAGTAATCTAATAACTAATAAACGACGTAATGGTCGTCAGGGTAGTATTGCGTCGTTATCTCTGTTAAAT
CTTAATTTAAGAGTTACCCT

Downstream 100 bases:

>100_bases
TATGAGCGTGCCGTTGTATTCATTACGGATTACCGCCGTCGGGGAATATGTTGAGTACTCTCTGCGGGAGCTGCGGCTTA
TTTTATTCTCCGATGCCGTT

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 1 [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MNINILEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLICGTSINIRQAGLPLYKGAVLL
FLKCLAGALAVWVAGTLFGPSGFLGISTLALIACLTSSNSSLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGL
ANIPFAALLSMLIPLLIGMLWGNLDERFKQLCAAAQPLVIIIMSFAIGANSSINTVFTAGLSGILLGIISALTGIVFYFI
YNLFLKKKSALGAALGTTAASSALTPAMVAQADHSLAMYVDAATAQLATASIITMITAPILVAWFDKRLKKRAPAAEPLK
EVKSEESVTLSSPAAKGHK

Sequences:

>Translated_339_residues
MNINILEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLICGTSINIRQAGLPLYKGAVLL
FLKCLAGALAVWVAGTLFGPSGFLGISTLALIACLTSSNSSLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGL
ANIPFAALLSMLIPLLIGMLWGNLDERFKQLCAAAQPLVIIIMSFAIGANSSINTVFTAGLSGILLGIISALTGIVFYFI
YNLFLKKKSALGAALGTTAASSALTPAMVAQADHSLAMYVDAATAQLATASIITMITAPILVAWFDKRLKKRAPAAEPLK
EVKSEESVTLSSPAAKGHK
>Mature_339_residues
MNINILEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLICGTSINIRQAGLPLYKGAVLL
FLKCLAGALAVWVAGTLFGPSGFLGISTLALIACLTSSNSSLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGL
ANIPFAALLSMLIPLLIGMLWGNLDERFKQLCAAAQPLVIIIMSFAIGANSSINTVFTAGLSGILLGIISALTGIVFYFI
YNLFLKKKSALGAALGTTAASSALTPAMVAQADHSLAMYVDAATAQLATASIITMITAPILVAWFDKRLKKRAPAAEPLK
EVKSEESVTLSSPAAKGHK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=327, Percent_Identity=29.3577981651376, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 35146; Mature: 35146

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINILEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLIC
CCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHH
GTSINIRQAGLPLYKGAVLLFLKCLAGALAVWVAGTLFGPSGFLGISTLALIACLTSSNS
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
SLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGLANIPFAALLSMLIPLLIGML
EEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WGNLDERFKQLCAAAQPLVIIIMSFAIGANSSINTVFTAGLSGILLGIISALTGIVFYFI
HCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNLFLKKKSALGAALGTTAASSALTPAMVAQADHSLAMYVDAATAQLATASIITMITAPI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
LVAWFDKRLKKRAPAAEPLKEVKSEESVTLSSPAAKGHK
HHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCCC
>Mature Secondary Structure
MNINILEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLIC
CCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHH
GTSINIRQAGLPLYKGAVLLFLKCLAGALAVWVAGTLFGPSGFLGISTLALIACLTSSNS
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
SLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGLANIPFAALLSMLIPLLIGML
EEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WGNLDERFKQLCAAAQPLVIIIMSFAIGANSSINTVFTAGLSGILLGIISALTGIVFYFI
HCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNLFLKKKSALGAALGTTAASSALTPAMVAQADHSLAMYVDAATAQLATASIITMITAPI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
LVAWFDKRLKKRAPAAEPLKEVKSEESVTLSSPAAKGHK
HHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]