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The map label for this gene is ompF [H]

Identifier: 238893985

GI number: 238893985

Start: 1879453

End: 1880532

Strand: Reverse

Name: ompF [H]

Synonym: KP1_1929

Alternate gene names: 238893985

Gene position: 1880532-1879453 (Counterclockwise)

Preceding gene: 238893987

Following gene: 238893984

Centisome position: 35.83

GC content: 54.26

Gene sequence:

>1080_bases
ATGATGAAGCGCAATATTCTGGCAGTGGTGATCCCTGCCCTGCTGGTAGCCGGTGCAGCCAACGCTGCAGAAATCTATAA
CAAAAACGGCAACAAACTGGACTTCTATGGAAAAATGGTCGGCGAGCACGTCTGGACCACCAATGGCGACACCAGCAGCG
ACGATACCACCTATGCCCGTATCGGCCTGAAAGGCGAAACTCAGATTAACGATCAGCTGATCGGCTACGGCCAGTGGGAA
TACAACATGGACGCGTCCAATGTTGAAGGTTCCCAGACCACAAAAACCCGTCTGGCGTTCGCGGGCCTGAAAGCGGGCGA
ATACGGTTCATTCGACTATGGCCGTAACTACGGCGCGATCTACGACGTCGAAGCGGCAACCGATATGCTGGTTGAATGGG
GCGGTGACGGCTGGAACTACACCGACAACTACATGACCGGTCGTACCAACGGCGTCGCAACCTACCGTAACTCCGACTTC
TTCGGTCTGGTTGACGGTCTGAGCTTCGCGCTGCAGTACCAGGGTAAAAACGACCACGACCGTGCGATTCGCAAGCAGAA
TGGCGACGGCTTCAGCACCGCAGCCACCTACGCGTTCGACAACGGTATCGCACTGTCTGCAGGCTACTCCAGCTCTAACC
GTAGCGTCGATCAGAAAGCTGACGGCAATGGCGACAAAGCCGAAGCCTGGGCGACCTCTGCAAAATATGACGCTAACAAC
ATCTATGCGGCCGTCATGTACTCCCAGACTTACAACATGACTCCGGAAGAAGATAACCACTTCGCCGGTAAAACTCAGAA
CTTTGAAGCAGTTGTACAGTATCAGTTTGACTTCGGCCTGCGTCCGTCCATCGGCTACGTACAGACCAAAGGCAAGGACC
TGCAGTCGCGTGCTGGCTTCTCCGGCGGCGATGCGGATCTGGTTAAATACATCGAAGTGGGTACCTGGTACTACTTTAAC
AAGAACATGAACGTCTACGCTGCGTATAAATTCAACCAGCTGGACGACAACGATTACACCAAAGCGGCTGGTGTCGCCAC
TGACGACCAGGCGGCCGTGGGTATCGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
ACCAAACTCTCATCAATGGTTCTGTAAGTTTTTATTGACAGAACTTATTGAGGGCAGTGGCACGTGTTCATATAAAAAAT
ATTAATGAGGGTAATAAATA

Downstream 100 bases:

>100_bases
TCTGCAGTACACCCCTTCGTGATATGCCTTCAAAGCAGGACTTCGGTCCTGCTTTTCTGTATTCGTGAGACAAAGATCGT
CTCTTTCGAAAACCTTCGCG

Product: outer membrane protein 1A/OmpK35 porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MMKRNILAVVIPALLVAGAANAAEIYNKNGNKLDFYGKMVGEHVWTTNGDTSSDDTTYARIGLKGETQINDQLIGYGQWE
YNMDASNVEGSQTTKTRLAFAGLKAGEYGSFDYGRNYGAIYDVEAATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDF
FGLVDGLSFALQYQGKNDHDRAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANN
IYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGFSGGDADLVKYIEVGTWYYFN
KNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF

Sequences:

>Translated_359_residues
MMKRNILAVVIPALLVAGAANAAEIYNKNGNKLDFYGKMVGEHVWTTNGDTSSDDTTYARIGLKGETQINDQLIGYGQWE
YNMDASNVEGSQTTKTRLAFAGLKAGEYGSFDYGRNYGAIYDVEAATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDF
FGLVDGLSFALQYQGKNDHDRAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANN
IYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGFSGGDADLVKYIEVGTWYYFN
KNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF
>Mature_359_residues
MMKRNILAVVIPALLVAGAANAAEIYNKNGNKLDFYGKMVGEHVWTTNGDTSSDDTTYARIGLKGETQINDQLIGYGQWE
YNMDASNVEGSQTTKTRLAFAGLKAGEYGSFDYGRNYGAIYDVEAATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDF
FGLVDGLSFALQYQGKNDHDRAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANN
IYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGFSGGDADLVKYIEVGTWYYFN
KNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787160, Length=373, Percent_Identity=57.1045576407507, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=53.7433155080214, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1786436, Length=362, Percent_Identity=54.9723756906077, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI1787641, Length=356, Percent_Identity=55.0561797752809, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39510; Mature: 39510

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRNILAVVIPALLVAGAANAAEIYNKNGNKLDFYGKMVGEHVWTTNGDTSSDDTTYAR
CCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHCCEEEECCCCCCCCCCEEEE
IGLKGETQINDQLIGYGQWEYNMDASNVEGSQTTKTRLAFAGLKAGEYGSFDYGRNYGAI
EECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCEE
YDVEAATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDFFGLVDGLSFALQYQGKNDHD
EEECHHHEEEEEECCCCCCCCCCEECCCCCCEEEEECCCCEEECCCEEEEEEECCCCCHH
RAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANN
HHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
IYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGF
EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHCCC
SGGDADLVKYIEVGTWYYFNKNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF
CCCCHHHEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MMKRNILAVVIPALLVAGAANAAEIYNKNGNKLDFYGKMVGEHVWTTNGDTSSDDTTYAR
CCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHCCEEEECCCCCCCCCCEEEE
IGLKGETQINDQLIGYGQWEYNMDASNVEGSQTTKTRLAFAGLKAGEYGSFDYGRNYGAI
EECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCEE
YDVEAATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDFFGLVDGLSFALQYQGKNDHD
EEECHHHEEEEEECCCCCCCCCCEECCCCCCEEEEECCCCEEECCCEEEEEEECCCCCHH
RAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANN
HHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
IYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGF
EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHCCC
SGGDADLVKYIEVGTWYYFNKNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF
CCCCHHHEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]