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The map label for this gene is ybiR [H]

Identifier: 238893872

GI number: 238893872

Start: 1741789

End: 1742901

Strand: Direct

Name: ybiR [H]

Synonym: KP1_1805

Alternate gene names: 238893872

Gene position: 1741789-1742901 (Clockwise)

Preceding gene: 238893871

Following gene: 238893873

Centisome position: 33.19

GC content: 59.66

Gene sequence:

>1113_bases
ATGACTCTTCCCTTCGTCCAGTCGCTGCTGCGCGATCGTTTTCTCCATTTGCTGCTGATTATCGCCTGCGTGCTCAGCGC
CATCGTGCCGTTTGTCCCGGCAAGCTGGCCGGCGGCCATTGACTGGCATACCATCGTCACGCTTAGCGGCCTGATGTTGT
TGACTAAGGGGATCGAACTGAGCGGCTATTTTGACGTGCTGGGCCGAAAAATGGCCCGCCGCTTTGTGACTGAGCGCCAG
CTGGCCATCTTTATGGTGCTGGCGGCGGCGCTGCTGTCTACCTTTCTTACCAACGACGTTGCGCTGTTTATTGTGGTGCC
GTTGACGCTGACGCTAAAAAAGTGGTGCGCCATCCCGGTGAACCGGCTGATTATTTTCGAAGCGTTGGCGGTGAACGCCG
GCTCGCTGCTGACGCCGATCGGCAACCCGCAGAATATTTTGCTGTGGGGACGATCCGGCCTCTCTTTCTTCGGGTTTATC
GGTCAGATGCTGCCTCTGGCAGCGGCGATGATGCTGACCCTGCTGGCGCTGTGCTGGTTCTGTTTTCCGGCGAAGCGGCT
CAGTTACCAGAGCAGCGACAGGGCGCCATCATGGCAACCCAAGCTCGTCTGGAGCTGTCTGGGACTGTATGTGGTGTTTC
TGACGGCGCTGGAGATGAATCAGGCCCTGTGGGGGCTGGCGCTGGTGCTGCTGGGCTTCCTGGTGCTGGCCCGGGCGGTG
ATCGTCCATGTCGACTGGTCGCTGTTGCTGGTGTTTATGGTGATGTTTATTGACGTCCATCTGCTGACCCAGCTTCCGGC
GCTGCACCAGGTGCTGAGCGGGGTGGGGACCCTCTCCGGCGGTGGACTGTGGCTGACCGCTATTGGCCTGTCGCAGGTGA
TCAGTAATGTGCCCTCGACTATTCTGTTGCTCAACTATGTCCCGCCGTCAATACTGCTCGCCTGGGCGGTTAACGTGGGC
GGCTTTGGCCTGCTGCCGGGCTCGCTGGCCAATATTATCGCCCTGCGTATGGCCAGCGATCGGCGCATCTGGTGGCGCTT
CCATCTCTACTCCATTCCAATGCTGCTATGGGCGGCACTCAGCGGCTACTGGCTCTTCAAACTCAGCGCCTGA

Upstream 100 bases:

>100_bases
AGATTGCCCGACGTGATGCGGAAGGGATGGAGCATCACGTGAGCGAAGAGACGCTGGCGATGTTCCTGAAATTTACCCAA
ACACAGGGATCTCAGGAAGC

Downstream 100 bases:

>100_bases
TCTCAACAGAATCGCGCCATCATTCACTTCGATCGCCAGGATCGCCTTTCGGGGCGATCTTTTTTTGTCCGGCTCACAGA
AACCGATCCCGGCCTTTGCT

Product: putative transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MTLPFVQSLLRDRFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQ
LAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFFGFI
GQMLPLAAAMMLTLLALCWFCFPAKRLSYQSSDRAPSWQPKLVWSCLGLYVVFLTALEMNQALWGLALVLLGFLVLARAV
IVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPSTILLLNYVPPSILLAWAVNVG
GFGLLPGSLANIIALRMASDRRIWWRFHLYSIPMLLWAALSGYWLFKLSA

Sequences:

>Translated_370_residues
MTLPFVQSLLRDRFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQ
LAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFFGFI
GQMLPLAAAMMLTLLALCWFCFPAKRLSYQSSDRAPSWQPKLVWSCLGLYVVFLTALEMNQALWGLALVLLGFLVLARAV
IVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPSTILLLNYVPPSILLAWAVNVG
GFGLLPGSLANIIALRMASDRRIWWRFHLYSIPMLLWAALSGYWLFKLSA
>Mature_369_residues
TLPFVQSLLRDRFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQL
AIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFFGFIG
QMLPLAAAMMLTLLALCWFCFPAKRLSYQSSDRAPSWQPKLVWSCLGLYVVFLTALEMNQALWGLALVLLGFLVLARAVI
VHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPSTILLLNYVPPSILLAWAVNVGG
FGLLPGSLANIIALRMASDRRIWWRFHLYSIPMLLWAALSGYWLFKLSA

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=363, Percent_Identity=78.7878787878788, Blast_Score=552, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40841; Mature: 40710

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPFVQSLLRDRFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
NRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFFGFIGQMLPLAAAMMLTLLALCWF
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPAKRLSYQSSDRAPSWQPKLVWSCLGLYVVFLTALEMNQALWGLALVLLGFLVLARAV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
ILLLNYVPPSILLAWAVNVGGFGLLPGSLANIIALRMASDRRIWWRFHLYSIPMLLWAAL
EEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
SGYWLFKLSA
CCCEEEEECC
>Mature Secondary Structure 
TLPFVQSLLRDRFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
NRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFFGFIGQMLPLAAAMMLTLLALCWF
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPAKRLSYQSSDRAPSWQPKLVWSCLGLYVVFLTALEMNQALWGLALVLLGFLVLARAV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
ILLLNYVPPSILLAWAVNVGGFGLLPGSLANIIALRMASDRRIWWRFHLYSIPMLLWAAL
EEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
SGYWLFKLSA
CCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]