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The map label for this gene is cspE [H]

Identifier: 238893691

GI number: 238893691

Start: 1554380

End: 1554673

Strand: Direct

Name: cspE [H]

Synonym: KP1_1611

Alternate gene names: 238893691

Gene position: 1554380-1554673 (Clockwise)

Preceding gene: 238893690

Following gene: 238893693

Centisome position: 29.62

GC content: 42.86

Gene sequence:

>294_bases
TTGCACTGGACAAAAGGTACCACAATTGGTGTACTGATACCCGACACAGCATTAGTGTCGATTTTTCATATAAAGGTAAT
TTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGATGGCA
GCAAAGATGTATTCGTACACTTCTCTGCAATCCAGTCCAACGGTTTCAAAACTCTGGCTGAAGGTCAGCGCGTAGAGTTC
GAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTCATCGCTCTGTAA

Upstream 100 bases:

>100_bases
CTTAGCAATAAATGAGATAAGCGGAAGGTCTTGTGCAAAAACAAGGACTAAAGCGTTACCCACTAAAAAAGATAGCGACT
TTTATCACTTTTTAGCAAAG

Downstream 100 bases:

>100_bases
GCAACGCGTCAGTAGAATATAAAAACCCGCTAATAAGCGGGTTTTTTTTTGCCTGTCTCCTTCGCTTTTAGCGGCTGGCC
GCCTGCGAGAAAAGCCAGAA

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MHWTKGTTIGVLIPDTALVSIFHIKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEF
EITNGAKGPSAANVIAL

Sequences:

>Translated_97_residues
MHWTKGTTIGVLIPDTALVSIFHIKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEF
EITNGAKGPSAANVIAL
>Mature_97_residues
MHWTKGTTIGVLIPDTALVSIFHIKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEF
EITNGAKGPSAANVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=74, Percent_Identity=44.5945945945946, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI34098946, Length=74, Percent_Identity=43.2432432432432, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI224586884, Length=74, Percent_Identity=44.5945945945946, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI156415990, Length=74, Percent_Identity=41.8918918918919, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=98.5507246376812, Blast_Score=139, Evalue=3e-35,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=82.6086956521739, Blast_Score=119, Evalue=4e-29,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=71.4285714285714, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=67.1428571428571, Blast_Score=103, Evalue=3e-24,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=67.1428571428571, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=67.6470588235294, Blast_Score=99, Evalue=6e-23,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=47.7611940298507, Blast_Score=62, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17508335, Length=75, Percent_Identity=41.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663131, Length=74, Percent_Identity=44.5945945945946, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 10536; Mature: 10536

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWTKGTTIGVLIPDTALVSIFHIKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVH
CCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEE
FSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
EEEECCCCCEECCCCCEEEEEECCCCCCCCCCEEEEC
>Mature Secondary Structure
MHWTKGTTIGVLIPDTALVSIFHIKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVH
CCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEE
FSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
EEEECCCCCEECCCCCEEEEEECCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]