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The map label for this gene is rnk [H]

Identifier: 238893687

GI number: 238893687

Start: 1550560

End: 1550970

Strand: Reverse

Name: rnk [H]

Synonym: KP1_1606

Alternate gene names: 238893687

Gene position: 1550970-1550560 (Counterclockwise)

Preceding gene: 238893688

Following gene: 238893686

Centisome position: 29.55

GC content: 61.8

Gene sequence:

>411_bases
ATGACCAGACCCGCAATCATCATTAATGAACTGGATGCCGAACGTATCGACAGGCTGCTGGAGCAGCCGGCTTTCGCCAA
CTCACCGGTTGCCGATGCCCTGAATGAGGAACTCGACCGCGCGCAAATGCTGGCCCCGGAAGCGATGCCGCATGATGTCG
TCACCATGAATAGCAGGGTAAAATTCCGCGATTTAACCAGCGGCGAAGAGCGCGTGCGGACGCTGGTGTTTCCGTCACAG
GTGACCGACAGCGCCAGCCAGCTCTCCGTCCTCGCGCCGGTGGGCGCCGCGCTGCTGGGCCTGAAAGTCGGCAGCACCAT
TCACTGGGAGCTGCCGGGCGGCGCATCGACGCACCTGGAAGTGCTGGAGCTATTGTACCAGCCGGAAGCCGCTGGCGAAT
TCCACCGCTAA

Upstream 100 bases:

>100_bases
CTGCCGGCAACTCTCAGTATGATGGTAGGACCTTAACCCTTGCCCCTTTCGGCGAGGGTTTTCTTTTACGGACAGGTTCC
TGGATAACATGGAGTATGCA

Downstream 100 bases:

>100_bases
TTCCGCTGCCTGAGGCGTTTCGCGCTTTATTCAGAGGATGTCCGCACATCCTCTTTCTGCTGTTTTCCCGCCGCTTACCC
TTTTTTACGCTTTGCGCCTG

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTRPAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQ
VTDSASQLSVLAPVGAALLGLKVGSTIHWELPGGASTHLEVLELLYQPEAAGEFHR

Sequences:

>Translated_136_residues
MTRPAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQ
VTDSASQLSVLAPVGAALLGLKVGSTIHWELPGGASTHLEVLELLYQPEAAGEFHR
>Mature_135_residues
TRPAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQV
TDSASQLSVLAPVGAALLGLKVGSTIHWELPGGASTHLEVLELLYQPEAAGEFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=76.865671641791, Blast_Score=220, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14868; Mature: 14737

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQMLAPEAMPHDVVTMNSRV
CCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCE
KFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGGASTHLE
EEECCCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
VLELLYQPEAAGEFHR
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TRPAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQMLAPEAMPHDVVTMNSRV
CCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCE
KFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGGASTHLE
EEECCCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
VLELLYQPEAAGEFHR
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]