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The map label for this gene is ybdD [H]

Identifier: 238893649

GI number: 238893649

Start: 1509727

End: 1509924

Strand: Direct

Name: ybdD [H]

Synonym: KP1_1564

Alternate gene names: 238893649

Gene position: 1509727-1509924 (Clockwise)

Preceding gene: 238893648

Following gene: 238893654

Centisome position: 28.76

GC content: 56.57

Gene sequence:

>198_bases
ATGTTTGACACCCTTTCCAAAGCAGGTAAGTACCTGGGCCAGGCGGCGAAGATGATGATCGGCGTGCCGGATTACGATAA
CTACGTCGAGCACATGCGAATAACCCACCCGGATCAGACGCCGATGACTTATGAAGAGTTCTTTCGCGAACGCCAGGACG
CGCGCTACGGCGGCAAGGGCGGGGCGAAGTGCTGTTAA

Upstream 100 bases:

>100_bases
TGTGCCGGGTGGCGGCTTCGCCTTACCCGGCCTGCATTTCCGATCCTCCCTCTCCCTTTGGGAGAGGCTCGGGGTGAGGG
ATACAAAAGAGAAATGACTT

Downstream 100 bases:

>100_bases
CCCTCTTTCGGCAGATAGAGGCTGATCTGCTCCTGAGTACAGCCGTAAATCGCCGCCAGCTTCTCGCGGGTGCGCTTTTG
CGGACGAGAGTCCAGCGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC

Sequences:

>Translated_65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>Mature_65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=89.2307692307692, Blast_Score=131, Evalue=7e-33,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=71.6417910447761, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7457; Mature: 7457

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GAKCC
CCCCC
>Mature Secondary Structure
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GAKCC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]