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The map label for this gene is rbsA [H]

Identifier: 238893654

GI number: 238893654

Start: 1512791

End: 1514341

Strand: Direct

Name: rbsA [H]

Synonym: KP1_1570

Alternate gene names: 238893654

Gene position: 1512791-1514341 (Clockwise)

Preceding gene: 238893649

Following gene: 238893655

Centisome position: 28.82

GC content: 62.22

Gene sequence:

>1551_bases
ATGAAAAATTCGTTAAATCAGAAGATTAATTGCCGCACGGGAGCAGTGATGAGCGCGAATCGCCTTGAGATGCATAACAT
TAGCCTGGCCTTCTCCGGCTTTCAGGCGCTGAACAAGGTGGACTTTACCCTCCATGGCGGGTCGGTGCATGCCCTGACCG
GGGCCAACGGCGCGGGTAAGTCGACGCTGATGGCCGTGCTGTGCGGCACCCACGCCCACTATGAGGGCGAAGTGACGATC
AACAACCAGCCGGTCATCATTCGTTCGCCGCGGGATGCTAAACAGCTGGGGATCCACCTGGTGCAGCAGGAGGTGGACGT
GGCGCTGGTGCCGGGCCTGAGCATTGCGGAAAACATTATGCTGGACAGGCTGGCGGAGCCGGGCATGACCTTCCGCTGGT
CGCGGGTTCGGCAGCTGGCGCGCGAGGCGCTGGCGCAGCTGGATGTGGCGCTGGACGTCCGGCGCTCCATTGACAGCTGC
ACGCTCGCCGAAAAACAGCAAATCCTGTTGGCCCGCGCCCTGTCGCACCATTGCCGCTTTTTGATCCTCGATGAACCCAC
TGCGCCGTTGGATCAGCATGAAAGTGAGCGTCTGTTTGCGGTAGTACGCCGTCTGCAGCATCAGGGGATCGGGGTGGTGT
TTATTTCGCATCGTATCCATGAGCTGAAGGCGATCTGCGACACCCTGACGGTGCTGCGCGACGGGCGGCTGATTGAGAGC
GGCCCGATGGGGCCGCTGAGCGGCGAACAGATCGTCGAAAAGATGCTGGGCCACGAGCTGAGCGATATCTTCCCGCCGCC
GCGCCCGCCGCACGGCGAAGAGGTGCTGTTGCAGGTTGACGGTCTGCATGATGAGGCGTTGCTGCAGGATATTTCGCTGC
GCCTGCGGAAGGGGGAAATTCTGGGTATCGCCGGGCTGGCCGGCGCGGGCAAAACCGAGCTGTGCAAAGCGCTGTTCGGC
GCCAGCAAAAGCCGGGTGCAGCGTGGCGAGCTGAACGGCCAGCCGTGGCGACCGCGCGATCCGGCCGACTCGGTGGGGCG
CGGCCTGGCGCTGGTCCCAGAGGAGCGACGCAAAGAGGGCATTTTCATTGAAGAGCCGATCGCGATGAACCTGGCGGTCA
GCGCCGATAACAGCTTTTCGCGCTGGAGCCTGTTTGGCCATCGGCAGGCCTGGCGCTGGGCGGAGGAGGTGATTGCCCGC
CTCGGCGTGCGCGCTACCGGTCCCGGTCAGACGCTGCGCCGTCTTTCTGGCGGCAACCAGCAGAAGGTGGCCATTGGCAA
ATGGCTGCGCGGTGATGCCAACGTTTTGATTTTTGACGAACCGACCAAAGGGGTCGATGTGAAAGCGAAAACCGATCTGT
TCATGCTGATCGATGGTCTGGCGCGGGAAGGCAAAGGGGTGATTTATGCCTCGGGTGAATTCGCCGAGCTGGTCGGTTTA
TGCGACCGCATCTGCGTACTGTGGGACGGACGGATCGTAGCGGAGATCCCCGGCGCGGAAGCCCGGGAAGAGACACTGCT
TTATTATTCAACCGGAGGAGCGGCAGCGTGA

Upstream 100 bases:

>100_bases
GGGTGTTGGGCTAACCTGATGTTATGTCTGGACATCCAGATGGCTAATATTATTTCGTTGTATCTTATGCTTTTTACGCA
GTTGTCAGCCAGCGGCGGCT

Downstream 100 bases:

>100_bases
GCAAGGCCCTGGCAGTGAACGCGACGGTATCGGGCCGTCAGCGATTTTTTGATTTTCTCTATAAGTGGGGCATGTTGCTG
ACCGTGGTGCTGCTGGTGGC

Product: putative ABC transport system ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MKNSLNQKINCRTGAVMSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTI
NNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMTFRWSRVRQLAREALAQLDVALDVRRSIDSC
TLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISHRIHELKAICDTLTVLRDGRLIES
GPMGPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQVDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFG
ASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIAR
LGVRATGPGQTLRRLSGGNQQKVAIGKWLRGDANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGL
CDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA

Sequences:

>Translated_516_residues
MKNSLNQKINCRTGAVMSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTI
NNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMTFRWSRVRQLAREALAQLDVALDVRRSIDSC
TLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISHRIHELKAICDTLTVLRDGRLIES
GPMGPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQVDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFG
ASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIAR
LGVRATGPGQTLRRLSGGNQQKVAIGKWLRGDANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGL
CDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>Mature_516_residues
MKNSLNQKINCRTGAVMSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTI
NNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMTFRWSRVRQLAREALAQLDVALDVRRSIDSC
TLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISHRIHELKAICDTLTVLRDGRLIES
GPMGPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQVDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFG
ASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIAR
LGVRATGPGQTLRRLSGGNQQKVAIGKWLRGDANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGL
CDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=229, Percent_Identity=25.3275109170306, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI156105685, Length=284, Percent_Identity=26.056338028169, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI21536378, Length=234, Percent_Identity=27.3504273504274, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1788472, Length=474, Percent_Identity=35.8649789029536, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1790190, Length=493, Percent_Identity=35.2941176470588, Blast_Score=305, Evalue=7e-84,
Organism=Escherichia coli, GI1790525, Length=489, Percent_Identity=35.7873210633947, Blast_Score=302, Evalue=3e-83,
Organism=Escherichia coli, GI1789991, Length=497, Percent_Identity=34.20523138833, Blast_Score=295, Evalue=4e-81,
Organism=Escherichia coli, GI1788210, Length=496, Percent_Identity=33.8709677419355, Blast_Score=287, Evalue=9e-79,
Organism=Escherichia coli, GI1787792, Length=474, Percent_Identity=37.3417721518987, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI1788897, Length=473, Percent_Identity=35.5179704016913, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI48995001, Length=481, Percent_Identity=33.2640332640333, Blast_Score=271, Evalue=6e-74,
Organism=Escherichia coli, GI1788506, Length=539, Percent_Identity=25.417439703154, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI48994943, Length=527, Percent_Identity=24.2884250474383, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786345, Length=252, Percent_Identity=28.968253968254, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=28.4444444444444, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693107, Length=568, Percent_Identity=24.4718309859155, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=26.1061946902655, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=26.5765765765766, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=26.7857142857143, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=25.7142857142857, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=25.6521739130435, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1790739, Length=230, Percent_Identity=28.695652173913, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787370, Length=224, Percent_Identity=25, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=30.4147465437788, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787548, Length=242, Percent_Identity=25.2066115702479, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI87082268, Length=206, Percent_Identity=29.6116504854369, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=26.3598326359833, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=24.1071428571429, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786975, Length=480, Percent_Identity=23.125, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787759, Length=243, Percent_Identity=27.5720164609054, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787547, Length=241, Percent_Identity=27.8008298755187, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786654, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=249, Percent_Identity=24.8995983935743, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=23.3050847457627, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789962, Length=216, Percent_Identity=25.462962962963, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=29.6650717703349, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787500, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=24.2290748898678, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787143, Length=239, Percent_Identity=27.6150627615063, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786872, Length=222, Percent_Identity=23.4234234234234, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=26.0089686098655, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=27.1493212669683, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788540, Length=247, Percent_Identity=28.3400809716599, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=25, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787758, Length=214, Percent_Identity=28.0373831775701, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788165, Length=212, Percent_Identity=27.8301886792453, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=21.7213114754098, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=226, Percent_Identity=29.646017699115, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=220, Percent_Identity=24.5454545454545, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 56462; Mature: 56462

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSLNQKINCRTGAVMSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGK
CCCCCCCCEECCCCCEECCCCEEEEEEEEEEHHHHHHCCEEEEEECCEEEEEECCCCCCH
STLMAVLCGTHAHYEGEVTINNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIM
HHHHHHHHCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
LDRLAEPGMTFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRF
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
LILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISHRIHELKAICDTLTVLRDGRLIES
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEC
GPMGPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQVDGLHDEALLQDISLRLRKGEI
CCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEECCCE
LGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEG
EEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCHHHHHCC
IFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQTLRRLSGGNQ
CEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
QKVAIGKWLRGDANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGL
CEEEEHHEECCCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHH
CDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
HHHEEEEECCEEEEECCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MKNSLNQKINCRTGAVMSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGK
CCCCCCCCEECCCCCEECCCCEEEEEEEEEEHHHHHHCCEEEEEECCEEEEEECCCCCCH
STLMAVLCGTHAHYEGEVTINNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIM
HHHHHHHHCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
LDRLAEPGMTFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRF
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
LILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISHRIHELKAICDTLTVLRDGRLIES
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEC
GPMGPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQVDGLHDEALLQDISLRLRKGEI
CCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEECCCE
LGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEG
EEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCHHHHHCC
IFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQTLRRLSGGNQ
CEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
QKVAIGKWLRGDANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGL
CEEEEHHEECCCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHH
CDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
HHHEEEEECCEEEEECCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]