Click here to switch to the map view.

The map label for this gene is ddpA [H]

Identifier: 238893612

GI number: 238893612

Start: 1464820

End: 1466388

Strand: Reverse

Name: ddpA [H]

Synonym: KP1_1526

Alternate gene names: 238893612

Gene position: 1466388-1464820 (Counterclockwise)

Preceding gene: 238893614

Following gene: 238893611

Centisome position: 27.94

GC content: 59.72

Gene sequence:

>1569_bases
ATGACCAAAAAACTGTTGCCTTTACTGCTACTGTCGGCGCTCTCCGCCGCCGCGCATGCCGCCACGCCGCCCAACACGCT
GGTGGTCGCCCAGGGTCTCGACGATATCGTCAGCCTCGACCCGGCGGAAGCTAACGAACTCTCCAGCATTCAGACGGTCC
CCAGCCTCTATCAGCGTCTGGTGCAGCCGGACCGCAACAACCCTGAAAAAATCGTACCGATCCTCGCCGAAAGCTGGCAG
GCCGATCCGGCGGCGAAAACCCTGACCATTAAACTGAAGCCGGATGCCAAATTCGCCTCCGGTAATCCGCTGCGCCCGGA
AGATGTGATTTTCTCTTACACCCGTGCGGTGACGCTGAATAAATCGCCAGCGTTTATTCTCAACGTGCTCGGCTGGCAGC
CGGACAACATCGCCAGCCAGCTGAAAAAGATTGATGACCATACCCTGACGCTGCACTGGACCGCCGACGTCAGCCCGGCG
GTGGCGCTGAATATTCTCTCCACCCCCATCGCCTCTATCGTGGATGAAAAACAGGTGGCGCCGAACGCGAAAAATAACGA
CTTCGGCAACGACTGGCTGAAGATGCACTCGGCGGGCAGCGGGGCCTATAAAATGCGCGTCTACCAGCCGCATCAGGCCA
TCGTGCTGGAGGCCAACGCCAGCTCCCCCACCGGCGCGCCGAAGATCAAGAGCATCATTATTAAAAACGTCCCCGACCCG
GCTTCCCGCCGCCTGCTGATCCAGCAGGGGGATGCCGACGTGGCGCGCGATCTCGGCGCTGACCAGATTGCCGCCCTGCA
GGATAAACCCGGCGTGAAGGTGCTGAGCATCCCGTCCGCCGAGCAGAACTACCTGGTGTTTAATACCGCCAACAGCGCCA
ACCCGCTGCTCAATAACCCGGCCTTCTGGGAGGCGGCGCGCTGGCTGGTTGATTATGAGGGCATCACCAAAAATCTGCTG
AAAGGCCAGTACTTTATTCACCAAAGCTTCCTGCCGGCCGGCCTGCCGGGGGCGCTGGAGACTAATCCGTTCACTTTTGA
CCCGCAAAAAGCTAAGGCTATCCTTGATAAAGCGGGCATTAAGGATGCCCACTTCACCCTCGATGTGGAGAACAAACCGC
CGTTTATCACCATCGCCCAATCGCTGCAGGCCAGCTTTGCCCAGGGCGGGGTGAAGGTGGATCTGCTACCCGCCGCCGGC
AGCCAGGTCTATGCCCGGGTGCGCGCGAAGCAGCATCAGGCGGCGATCCGCCTGTGGATCCCGGACTACTTTGATGCCCA
CTCCAATGCCAGCGCCTTTGCCTGGAACGATGGTAAATCCAGCACCGTGGCCGGGCTCAACGGCTGGCAGATCCCTGAGC
TGAATAAAGCCACCCTCGCCGCGGTGGCGGAGCCGGACCCGGCGAAACGCCTCGACCTGTACAAAACGATGCAGGAAACC
CTGCTCCAGCATTCGCCGTACGTCTTTATTGACCAGGGGAAAACCCAGATCGTGGTGCGTGAAAACGTGAAGGGCTATCA
GCAGGGACTGAACGCCGACATGGTCTGGTACGATAACGTGACCAAGTAA

Upstream 100 bases:

>100_bases
TAGCATAAGGATATCCTTATTTTGACTTTACGCCTTATGGCAAGCGGCCTAACGTAGCGAGGCATAAAACAATAAAATAA
CCATTCTTCAGGGATTGCAC

Downstream 100 bases:

>100_bases
GCGGGTTTTGTCACCGGGTACGGCGGCCTTGTCTGCCCGGATGACCGACTCCTCACCCGGGCCCGGTCGGCATCGCGCCG
CCGGGTACAATGCTGATATA

Product: putative ABC transport system periplasmic dipeptide binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MTKKLLPLLLLSALSAAAHAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRNNPEKIVPILAESWQ
ADPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKIDDHTLTLHWTADVSPA
VALNILSTPIASIVDEKQVAPNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASSPTGAPKIKSIIIKNVPDP
ASRRLLIQQGDADVARDLGADQIAALQDKPGVKVLSIPSAEQNYLVFNTANSANPLLNNPAFWEAARWLVDYEGITKNLL
KGQYFIHQSFLPAGLPGALETNPFTFDPQKAKAILDKAGIKDAHFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAG
SQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKTMQET
LLQHSPYVFIDQGKTQIVVRENVKGYQQGLNADMVWYDNVTK

Sequences:

>Translated_522_residues
MTKKLLPLLLLSALSAAAHAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRNNPEKIVPILAESWQ
ADPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKIDDHTLTLHWTADVSPA
VALNILSTPIASIVDEKQVAPNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASSPTGAPKIKSIIIKNVPDP
ASRRLLIQQGDADVARDLGADQIAALQDKPGVKVLSIPSAEQNYLVFNTANSANPLLNNPAFWEAARWLVDYEGITKNLL
KGQYFIHQSFLPAGLPGALETNPFTFDPQKAKAILDKAGIKDAHFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAG
SQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKTMQET
LLQHSPYVFIDQGKTQIVVRENVKGYQQGLNADMVWYDNVTK
>Mature_521_residues
TKKLLPLLLLSALSAAAHAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRNNPEKIVPILAESWQA
DPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKIDDHTLTLHWTADVSPAV
ALNILSTPIASIVDEKQVAPNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASSPTGAPKIKSIIIKNVPDPA
SRRLLIQQGDADVARDLGADQIAALQDKPGVKVLSIPSAEQNYLVFNTANSANPLLNNPAFWEAARWLVDYEGITKNLLK
GQYFIHQSFLPAGLPGALETNPFTFDPQKAKAILDKAGIKDAHFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAGS
QVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKTMQETL
LQHSPYVFIDQGKTQIVVRENVKGYQQGLNADMVWYDNVTK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=507, Percent_Identity=29.9802761341223, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI1789966, Length=474, Percent_Identity=24.2616033755274, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1787052, Length=516, Percent_Identity=24.2248062015504, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787551, Length=533, Percent_Identity=24.202626641651, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789887, Length=522, Percent_Identity=24.7126436781609, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081878, Length=310, Percent_Identity=26.1290322580645, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56854; Mature: 56723

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKLLPLLLLSALSAAAHAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRL
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQPDRNNPEKIVPILAESWQADPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLN
HCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHEEEEEEEEEC
KSPAFILNVLGWQPDNIASQLKKIDDHTLTLHWTADVSPAVALNILSTPIASIVDEKQVA
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
PNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASSPTGAPKIKSIIIKNVPDP
CCCCCCCCCCHHHEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHEECCCCH
ASRRLLIQQGDADVARDLGADQIAALQDKPGVKVLSIPSAEQNYLVFNTANSANPLLNNP
HHCEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCC
AFWEAARWLVDYEGITKNLLKGQYFIHQSFLPAGLPGALETNPFTFDPQKAKAILDKAGI
CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
KDAHFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAGSQVYARVRAKQHQAAIRLWI
CCCEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEC
PDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKTMQET
CCHHCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
LLQHSPYVFIDQGKTQIVVRENVKGYQQGLNADMVWYDNVTK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure 
TKKLLPLLLLSALSAAAHAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRL
CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQPDRNNPEKIVPILAESWQADPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLN
HCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHEEEEEEEEEC
KSPAFILNVLGWQPDNIASQLKKIDDHTLTLHWTADVSPAVALNILSTPIASIVDEKQVA
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
PNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASSPTGAPKIKSIIIKNVPDP
CCCCCCCCCCHHHEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHEECCCCH
ASRRLLIQQGDADVARDLGADQIAALQDKPGVKVLSIPSAEQNYLVFNTANSANPLLNNP
HHCEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCC
AFWEAARWLVDYEGITKNLLKGQYFIHQSFLPAGLPGALETNPFTFDPQKAKAILDKAGI
CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
KDAHFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAGSQVYARVRAKQHQAAIRLWI
CCCEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEC
PDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKTMQET
CCHHCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
LLQHSPYVFIDQGKTQIVVRENVKGYQQGLNADMVWYDNVTK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]