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The map label for this gene is rbsR [H]

Identifier: 238893566

GI number: 238893566

Start: 1414945

End: 1415925

Strand: Direct

Name: rbsR [H]

Synonym: KP1_1474

Alternate gene names: 238893566

Gene position: 1414945-1415925 (Clockwise)

Preceding gene: 238893564

Following gene: 238893569

Centisome position: 26.96

GC content: 62.08

Gene sequence:

>981_bases
ATGTCTATTCAGAAAATTGCTCGTCTGGCCGGCGTCTCGGTGGCCACGGTGTCGCGGGTGCTGAACAACAGCGATACGGT
AAAAGCCAAAAACCGTGAGCGCGTGCTGCAGGCGATCAAAGAGAGCAACTATCAGCCGAACCTGCTGGCGCGTCAGCTGC
GAACCGCCCGCAGCAATATGATCCTTGTGATGGTCTCCAATATCGCTAACCCCTTTTGCGCCGAGGTGGTGAAGGGGATA
GAAGAAGAGGCGGAGAAGAATGGCTATCGCATTCTGCTGTGTAACTCCGGGTCGGATCTGGCCCGCTCGACCTCGGGCCT
GCAGCTTCTCTCCGGCAAAATGGTCGACGGCATTATTACCATGAACGCGCTCTCCAGCCTGCCGGAACTGACCACCATGA
TTGGCGATGCGCCCTGGGTGCAGTGCGCGGAGTATGCCGACACCGGCAGCATCTCCTGCGTCGGGATTAACGACGTTGAG
GCGGCTCAGGGGGCGGTATCCCGGTTGGCCGATAGCGGCCGCCGCCGCATCGCGCTCATTAATCACGACCTCAGCTATCG
CTATGCCCGTCTGCGCGAGCGCGGCTATAAAAGCGTGCTGCACGTGCACGGTCTGGCGTATCAGCAGGTGACCTACGCGC
AGGATCTTAGCGCGGCGGCCGGTAAACGGGCGATGGAGCAACTGCTGTCGCAAGACGAGAAACCCGATGCGGTGTTTGCC
GTTTCGGACTCCCTCGCCGCCGGGGCGCTGCGGGCTATCGCCCAGGCCGGACTGCGGGTGCCGGAAGATATCGCGGTGAT
CGGCTTCGATGGCACCGAGCTGGCGGAAGTGGTCTCCCCGCAGCTCACCACCGTCGAACAGCCCTCCCGGGCGATCGGCC
GTACGGCGGTGTCTCTACTGATGAAACGCATCGACGATCCCGACGCTGCCGTCGAACGGGTGATGATGGACTGGCGCGTG
ATAGACCGCGCCAGCGTCTGA

Upstream 100 bases:

>100_bases
GTCTCGCTGAGCTACGCTTTCGCGCCAGGCTGGCAGGCCAATCAGAGGTCATTTATGATAGCCTGCAGGATCCACCTCTA
TCGCAGGAAGTGCAGGGTTT

Downstream 100 bases:

>100_bases
GGATCAGCGGGAGAAGGCGCCGGTCAGCGCGCGAATATCGTTGCCGGTGGGCGTTTGATGAATGCGTAAGCCAAACTCAT
CCACCACAGCGAAGACATGG

Product: putative LacI family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSIQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSNMILVMVSNIANPFCAEVVKGI
EEEAEKNGYRILLCNSGSDLARSTSGLQLLSGKMVDGIITMNALSSLPELTTMIGDAPWVQCAEYADTGSISCVGINDVE
AAQGAVSRLADSGRRRIALINHDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLLSQDEKPDAVFA
VSDSLAAGALRAIAQAGLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLLMKRIDDPDAAVERVMMDWRV
IDRASV

Sequences:

>Translated_326_residues
MSIQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSNMILVMVSNIANPFCAEVVKGI
EEEAEKNGYRILLCNSGSDLARSTSGLQLLSGKMVDGIITMNALSSLPELTTMIGDAPWVQCAEYADTGSISCVGINDVE
AAQGAVSRLADSGRRRIALINHDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLLSQDEKPDAVFA
VSDSLAAGALRAIAQAGLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLLMKRIDDPDAAVERVMMDWRV
IDRASV
>Mature_325_residues
SIQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSNMILVMVSNIANPFCAEVVKGIE
EEAEKNGYRILLCNSGSDLARSTSGLQLLSGKMVDGIITMNALSSLPELTTMIGDAPWVQCAEYADTGSISCVGINDVEA
AQGAVSRLADSGRRRIALINHDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLLSQDEKPDAVFAV
SDSLAAGALRAIAQAGLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLLMKRIDDPDAAVERVMMDWRVI
DRASV

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=327, Percent_Identity=35.1681957186544, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1790369, Length=328, Percent_Identity=33.8414634146341, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787948, Length=336, Percent_Identity=30.952380952381, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1788474, Length=304, Percent_Identity=30.9210526315789, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1787580, Length=320, Percent_Identity=32.1875, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789068, Length=313, Percent_Identity=29.3929712460064, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI48994940, Length=306, Percent_Identity=29.4117647058824, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786540, Length=319, Percent_Identity=31.0344827586207, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789202, Length=290, Percent_Identity=30, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1790715, Length=323, Percent_Identity=27.8637770897833, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789456, Length=317, Percent_Identity=28.391167192429, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786268, Length=317, Percent_Identity=23.9747634069401, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787906, Length=337, Percent_Identity=25.5192878338279, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1790689, Length=305, Percent_Identity=23.2786885245902, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790192, Length=233, Percent_Identity=27.4678111587983, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35272; Mature: 35141

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSNM
CCHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCE
ILVMVSNIANPFCAEVVKGIEEEAEKNGYRILLCNSGSDLARSTSGLQLLSGKMVDGIIT
EEEEHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCHHHHHCHHHHHHHH
MNALSSLPELTTMIGDAPWVQCAEYADTGSISCVGINDVEAAQGAVSRLADSGRRRIALI
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
NHDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLLSQDEKPDAVFA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VSDSLAAGALRAIAQAGLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLL
ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
MKRIDDPDAAVERVMMDWRVIDRASV
HHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSNM
CHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCE
ILVMVSNIANPFCAEVVKGIEEEAEKNGYRILLCNSGSDLARSTSGLQLLSGKMVDGIIT
EEEEHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCHHHHHCHHHHHHHH
MNALSSLPELTTMIGDAPWVQCAEYADTGSISCVGINDVEAAQGAVSRLADSGRRRIALI
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
NHDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLLSQDEKPDAVFA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VSDSLAAGALRAIAQAGLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLL
ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
MKRIDDPDAAVERVMMDWRVIDRASV
HHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]