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The map label for this gene is ybaE [H]

Identifier: 238893394

GI number: 238893394

Start: 1234141

End: 1235841

Strand: Reverse

Name: ybaE [H]

Synonym: KP1_1278

Alternate gene names: 238893394

Gene position: 1235841-1234141 (Counterclockwise)

Preceding gene: 238893396

Following gene: 238893393

Centisome position: 23.55

GC content: 62.43

Gene sequence:

>1701_bases
ATGCGACTCTTACACCGTTTAAATCAATACCAGCGCCTATGGCAACCCTCAGCCGGGGCGCCGCAGCAGGTCACCGTCGG
CGAACTGGCGGAGCGCTGTTTTTGCAGCGAGCGCCACGTCCGTACTCTGCTGCGTCAGGCGCAGGAGGCCGGGTGGCTAA
GCTGGCAGGCCAGCTCCGGGCGCGGCAAACGCGGACAGCTCTCATTTCACAAAACCCCGGAAAGTCTGCGCAACGAGATG
ATGGAGCAGGCGCTGAACAACGGTCAGCAACAAACCGCGCTGGAGCTGGCGCAGCTTGCCCCGGTGGAGCTGAAAGCCCT
GCTCCATCCCTTCCTCGGCGGTCAGTGGCAAAACAATACCCCCACGCTGCGTATTCCTTACTATCGCCCGCTGGAGCCGC
TGCGTCCCGGCTTTCTCCCCGGCCGCGCCGAGCAGCATCTGGCCGGACAAATCTATGCCGGGCTGACGCGCTTCGACGAA
GGCGACAATATGCCGATCGGCGATCTGGCGCACCACTGGCAGGTCTCCCCGGACGGCCTGCGCTGGCATTTTTATATCCG
CTCCACGCTGTGCTGGCACAATGGCGATACGGTGGAAACCGCGCAGTTGCGACAGCGGTTACTGCTGCTGCTTGAGCTGC
CCGCCTTGCGGACCCTCTTCGCCAGCATCAGCCGTATCGATGTCACCCATGCCCAGTGTTTAACAATAACCCTGCATCGC
CCTGACTACTGGCTGCCGTTCCGCCTCGCCAGCTACTGCAGCGTGCTGGCGCATCCCGACGATCCGGCCATTGGCTGCGG
ACCGTTCCGCCTAAAGCGGTTTAGTCCGGAACTCGTCCGCCTGGAAAACCATCCCCGCTACCACCTGCAGCATCCGCTGA
TCCAGGCGGTGGAGTACTGGATCACTCCTCAGCTCTTTGACCGCGATCTCGGCACCAGCTGCCGCCATCCGGTGCAGATC
ACCATCGGCGATCGCGAAGAGCTGCATAATCTGCGTCAGGTCAGCAACCGTATCAGCCTTGGCTTCTGCTATTTGACCCT
GCGCCACAGCCCTCGGCTTAGCAAAGCGCAGGCCCAGCGGCTGGTGTCGATAATCCATCACTCGTCGCTACTGGATACGC
TGCCGCTGGAGGAGGAGCTGATTACGCCAAGCCATGAGGTGCTGCCGGGATGGTCCATCCCGCAGGGACCGGCAAACAAC
GCGGTACCGCTGCCGGCCAGGCTCACCCTGCTCTATCATCTGCCGGTCGAGCTACATGCGATGGCCGAACAGCTGAGGCA
ACGTCTGGCTCTGCTGGGCTGCGAGCTGACGCTCCTGTTCCACGACGCTAAAAACTGGGAAGGCTGCCAGCATCTGGGGC
AGGCCGACCTGATGATGGGCGACCGTCTGATCGGCGAAGCGCCGGAGTACGCCCTGGAACAGTGGCTGCGCTGCGATATG
CTGTGGCCTAATTTGCTGACCGGGGCGCAATATGCTCATCTGCAGGCGACATTAGACGCGGTGCAGTCTCAGCCCGACGC
TCGCAGCCGCAACGATGCGCTGCGCAACGTATTTAACAGCCTGATGGAAGACGCCATCATGACGCCGCTGTTCAAGTATA
ACTATCGGATCAGCGCGCCACCGGGGGTCAATGGTCTGCGCCTCAACGCCCGGGGCTGGTTCGACTTCGCCAGCGCCTGG
CTGCCGGCCTCGTCGACGTGA

Upstream 100 bases:

>100_bases
TCGCTTGTGTTGCAGTATCACCTGGGATATACGGAAGTAATAGTGAATAGATATTATTAATTGTTCCGGGTTTACAGCGG
CCCGGTGGACGACGGCCCCC

Downstream 100 bases:

>100_bases
GAGAGCTGGTGATGGAGGGCGTCTGGCGCTACCATATCGCCTTTATTCATTTAGTCAGGAATTGCCATGAAACGCGCCGT
AGTTGTCTTCAGCGGAGGAC

Product: putative ABC transport system periplasmic binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MRLLHRLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSGRGKRGQLSFHKTPESLRNEM
MEQALNNGQQQTALELAQLAPVELKALLHPFLGGQWQNNTPTLRIPYYRPLEPLRPGFLPGRAEQHLAGQIYAGLTRFDE
GDNMPIGDLAHHWQVSPDGLRWHFYIRSTLCWHNGDTVETAQLRQRLLLLLELPALRTLFASISRIDVTHAQCLTITLHR
PDYWLPFRLASYCSVLAHPDDPAIGCGPFRLKRFSPELVRLENHPRYHLQHPLIQAVEYWITPQLFDRDLGTSCRHPVQI
TIGDREELHNLRQVSNRISLGFCYLTLRHSPRLSKAQAQRLVSIIHHSSLLDTLPLEEELITPSHEVLPGWSIPQGPANN
AVPLPARLTLLYHLPVELHAMAEQLRQRLALLGCELTLLFHDAKNWEGCQHLGQADLMMGDRLIGEAPEYALEQWLRCDM
LWPNLLTGAQYAHLQATLDAVQSQPDARSRNDALRNVFNSLMEDAIMTPLFKYNYRISAPPGVNGLRLNARGWFDFASAW
LPASST

Sequences:

>Translated_566_residues
MRLLHRLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSGRGKRGQLSFHKTPESLRNEM
MEQALNNGQQQTALELAQLAPVELKALLHPFLGGQWQNNTPTLRIPYYRPLEPLRPGFLPGRAEQHLAGQIYAGLTRFDE
GDNMPIGDLAHHWQVSPDGLRWHFYIRSTLCWHNGDTVETAQLRQRLLLLLELPALRTLFASISRIDVTHAQCLTITLHR
PDYWLPFRLASYCSVLAHPDDPAIGCGPFRLKRFSPELVRLENHPRYHLQHPLIQAVEYWITPQLFDRDLGTSCRHPVQI
TIGDREELHNLRQVSNRISLGFCYLTLRHSPRLSKAQAQRLVSIIHHSSLLDTLPLEEELITPSHEVLPGWSIPQGPANN
AVPLPARLTLLYHLPVELHAMAEQLRQRLALLGCELTLLFHDAKNWEGCQHLGQADLMMGDRLIGEAPEYALEQWLRCDM
LWPNLLTGAQYAHLQATLDAVQSQPDARSRNDALRNVFNSLMEDAIMTPLFKYNYRISAPPGVNGLRLNARGWFDFASAW
LPASST
>Mature_566_residues
MRLLHRLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSGRGKRGQLSFHKTPESLRNEM
MEQALNNGQQQTALELAQLAPVELKALLHPFLGGQWQNNTPTLRIPYYRPLEPLRPGFLPGRAEQHLAGQIYAGLTRFDE
GDNMPIGDLAHHWQVSPDGLRWHFYIRSTLCWHNGDTVETAQLRQRLLLLLELPALRTLFASISRIDVTHAQCLTITLHR
PDYWLPFRLASYCSVLAHPDDPAIGCGPFRLKRFSPELVRLENHPRYHLQHPLIQAVEYWITPQLFDRDLGTSCRHPVQI
TIGDREELHNLRQVSNRISLGFCYLTLRHSPRLSKAQAQRLVSIIHHSSLLDTLPLEEELITPSHEVLPGWSIPQGPANN
AVPLPARLTLLYHLPVELHAMAEQLRQRLALLGCELTLLFHDAKNWEGCQHLGQADLMMGDRLIGEAPEYALEQWLRCDM
LWPNLLTGAQYAHLQATLDAVQSQPDARSRNDALRNVFNSLMEDAIMTPLFKYNYRISAPPGVNGLRLNARGWFDFASAW
LPASST

Specific function: Unknown

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786650, Length=565, Percent_Identity=71.5044247787611, Blast_Score=813, Evalue=0.0,
Organism=Escherichia coli, GI1786256, Length=581, Percent_Identity=29.6041308089501, Blast_Score=182, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 64551; Mature: 64551

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLHRLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSG
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCC
RGKRGQLSFHKTPESLRNEMMEQALNNGQQQTALELAQLAPVELKALLHPFLGGQWQNNT
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC
PTLRIPYYRPLEPLRPGFLPGRAEQHLAGQIYAGLTRFDEGDNMPIGDLAHHWQVSPDGL
CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCE
RWHFYIRSTLCWHNGDTVETAQLRQRLLLLLELPALRTLFASISRIDVTHAQCLTITLHR
EEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEEC
PDYWLPFRLASYCSVLAHPDDPAIGCGPFRLKRFSPELVRLENHPRYHLQHPLIQAVEYW
CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHEEECCCCCHHHHHHHHHHHHHH
ITPQLFDRDLGTSCRHPVQITIGDREELHNLRQVSNRISLGFCYLTLRHSPRLSKAQAQR
CCHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHH
LVSIIHHSSLLDTLPLEEELITPSHEVLPGWSIPQGPANNAVPLPARLTLLYHLPVELHA
HHHHHHHHHHHHHCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHEEEEEECCHHHHH
MAEQLRQRLALLGCELTLLFHDAKNWEGCQHLGQADLMMGDRLIGEAPEYALEQWLRCDM
HHHHHHHHHHHHCCEEEEEEECCCCCHHHHHCCCHHHHHCCHHHCCCHHHHHHHHHHHHC
LWPNLLTGAQYAHLQATLDAVQSQPDARSRNDALRNVFNSLMEDAIMTPLFKYNYRISAP
CCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCEEECCC
PGVNGLRLNARGWFDFASAWLPASST
CCCCCEEEECCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MRLLHRLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSG
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCC
RGKRGQLSFHKTPESLRNEMMEQALNNGQQQTALELAQLAPVELKALLHPFLGGQWQNNT
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC
PTLRIPYYRPLEPLRPGFLPGRAEQHLAGQIYAGLTRFDEGDNMPIGDLAHHWQVSPDGL
CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCE
RWHFYIRSTLCWHNGDTVETAQLRQRLLLLLELPALRTLFASISRIDVTHAQCLTITLHR
EEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEEC
PDYWLPFRLASYCSVLAHPDDPAIGCGPFRLKRFSPELVRLENHPRYHLQHPLIQAVEYW
CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHEEECCCCCHHHHHHHHHHHHHH
ITPQLFDRDLGTSCRHPVQITIGDREELHNLRQVSNRISLGFCYLTLRHSPRLSKAQAQR
CCHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHH
LVSIIHHSSLLDTLPLEEELITPSHEVLPGWSIPQGPANNAVPLPARLTLLYHLPVELHA
HHHHHHHHHHHHHCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHEEEEEECCHHHHH
MAEQLRQRLALLGCELTLLFHDAKNWEGCQHLGQADLMMGDRLIGEAPEYALEQWLRCDM
HHHHHHHHHHHHCCEEEEEEECCCCCHHHHHCCCHHHHHCCHHHCCCHHHHHHHHHHHHC
LWPNLLTGAQYAHLQATLDAVQSQPDARSRNDALRNVFNSLMEDAIMTPLFKYNYRISAP
CCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCEEECCC
PGVNGLRLNARGWFDFASAWLPASST
CCCCCEEEECCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]