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The map label for this gene is trmA [H]

Identifier: 238892362

GI number: 238892362

Start: 115924

End: 117024

Strand: Reverse

Name: trmA [H]

Synonym: KP1_0119

Alternate gene names: 238892362

Gene position: 117024-115924 (Counterclockwise)

Preceding gene: 238892366

Following gene: 238892359

Centisome position: 2.23

GC content: 57.4

Gene sequence:

>1101_bases
ATGACCCCCGAACACCTTCCTACTGAACAATACGAAGCGCAGCTGGCAGAAAAAGTCGTCCGTTTGCAAACCATGATGGC
GCCTTTTGCCGCGCCGGTTCCGGAAGTGTTTCGTTCGCCGGTCAGCCACTACCGTATGCGCGCCGAGTTTCGTCTGTGGC
ACGATGGCGACGATCTGTACCATATTATTTTCGATCAGCAGACCCGGTCGCGGATTCGCGTTGACAGCTTCCCGGCCGCC
AGCGCGCTGATCAATCAGCTGATGACCGCCATGCTGGAGGGCGTACGCAACAATCCCGTGCTACGCCAGAAGCTGTTCCA
GATTGACTATCTGACCACCCTCAGCAACCAGGCGGTCGTTTCGCTGCTGTATCATAAAAAGCTGGACGATGCCTGGCGTG
AGCAAGCGGAGGCGCTGCGTGACGCCCTGCGAGCCCAGGGGCTCAATGTGCATCTGATTGGGCGGGCGACCAAAACCAAA
ATCGAGCTCGATCAGGATTATATAGATGAACGCCTGCCGGTTGGCGGGCGGGAGATGATCTACCGTCAGGTGGAAAACAG
CTTTACCCAACCGAACGCGGCCATGAACATTCAGATGCTGGAGTGGGCACTGGATGTCACCAAAGGGGCGACTGGCGACC
TGCTGGAATTGTACTGCGGCAACGGTAACTTCTCGCTGGCGCTGGCGCGTAATTTCGATCGCGTATTGGCCACCGAAATC
GCCAAACCGTCGGTGGCGGCGGCGCAGTACAACATCGCCGCTAACCATATCGACAACGTGCAGATTATCCGCATGGCGGC
GGAAGAGTTTACTCAGGCGATGAACGGGGTGCGGCAGTTCAACCGGCTGCAGGGTATCGATCTGCATAGCTATCAGTGCG
AAACCATCTTCGTCGATCCACCGCGCAGCGGGCTGGACAGCGAGACGGAAAAAATGGTGCAGGCCTATCCGCGTATTTTG
TACATTTCGTGCAACCCGGAAACGCTGTGTCGCAATCTGGAAACGCTAAGCCAGACGCACAACGTTACCCGGCTGGCGCT
GTTCGACCAGTTCCCGTATACCCATCACATGGAGTGCGGCGTCCTGCTGACCCGCAAATAG

Upstream 100 bases:

>100_bases
ATGTCCAGACTGCTAATTATATTTCCCGCGGCATTCGAGGCTGGACATCCCCGGCGCTTTCCCTACAATCCCCGCGTACT
TATTTTATTCAGGATACATC

Downstream 100 bases:

>100_bases
GCCCAAAAAAACCGGCAACGTCATATTGCCGGTTTTTTTACCGCTGGCGGCTTACTCGGCTGCGGTATCTTTGCGGTTAC
GCATCTTGTAGCCGATCCAG

Product: tRNA (uracil-5-)-methyltransferase

Products: NA

Alternate protein names: tRNA(M-5-U54)-methyltransferase; RUMT [H]

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MTPEHLPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFDQQTRSRIRVDSFPAA
SALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYHKKLDDAWREQAEALRDALRAQGLNVHLIGRATKTK
IELDQDYIDERLPVGGREMIYRQVENSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEI
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGLDSETEKMVQAYPRIL
YISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTRK

Sequences:

>Translated_366_residues
MTPEHLPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFDQQTRSRIRVDSFPAA
SALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYHKKLDDAWREQAEALRDALRAQGLNVHLIGRATKTK
IELDQDYIDERLPVGGREMIYRQVENSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEI
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGLDSETEKMVQAYPRIL
YISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTRK
>Mature_365_residues
TPEHLPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFDQQTRSRIRVDSFPAAS
ALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYHKKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKI
ELDQDYIDERLPVGGREMIYRQVENSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIA
KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGLDSETEKMVQAYPRILY
ISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTRK

Specific function: Catalyzes the formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs [H]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family. TrmA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790403, Length=366, Percent_Identity=93.4426229508197, Blast_Score=723, Evalue=0.0,
Organism=Escherichia coli, GI1789148, Length=184, Percent_Identity=34.7826086956522, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787083, Length=184, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666579, Length=197, Percent_Identity=27.9187817258883, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: 500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011869
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: =2.1.1.35 [H]

Molecular weight: Translated: 41859; Mature: 41728

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01230 TRMA_1 ; PS01231 TRMA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPEHLPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHEEEEEECCCCEE
HIIFDQQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVV
EEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHH
SLLYHKKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHCCCCCHHHHH
YRQVENSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEI
HHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHH
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDP
CCCCHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
PRSGLDSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECG
CCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
VLLTRK
EEEECC
>Mature Secondary Structure 
TPEHLPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHEEEEEECCCCEE
HIIFDQQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVV
EEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHH
SLLYHKKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHCCCCCHHHHH
YRQVENSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEI
HHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHH
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDP
CCCCHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
PRSGLDSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECG
CCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
VLLTRK
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA