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The map label for this gene is yodA [H]

Identifier: 238892352

GI number: 238892352

Start: 103977

End: 104627

Strand: Direct

Name: yodA [H]

Synonym: KP1_0107

Alternate gene names: 238892352

Gene position: 103977-104627 (Clockwise)

Preceding gene: 238892348

Following gene: 238892355

Centisome position: 1.98

GC content: 54.07

Gene sequence:

>651_bases
ATGACCAGAAAGATCCCCCTGCTGGCCTTAGGATTCGGCATGGCTTTAGCCAGCGCCCAGGCGTTCGCCCACGGCAACCA
TAGCCATGGCCCGGCGTTAACCGAAGTGGAGCGTCAGGCCAGCGAAGGCATTTTTGCGGATAAAGATGTGCAGGACCGCG
CGCTGAGCGACTGGGAAGGCGTCTGGCAGTCGGTGAACCCGTATCTGCTCAACGGCGATCTCGATCCGGTGCTGGAGCAG
AAGGCGAAAAAGCCCGGCGGCAAGAGCGTGGAGGAGTATCGCGCCTATTATAAGAAGGGCTACGCCACCGATGTGGAGCA
GATTGGCATTGAAGATGACGTGATTGAGTTCCACGTTGGCCAGACCGTAAATAGCTGCAAATACCGCTATTCAGGCTATA
AAATTCTGCATTACGCCTCCGGTAAGAAGGGCGTGCGTTATCTGTTCGAGTGCCAGCAGGGCGATGCCAACGCGCCGAAA
TTTGTGCAATTCAGCGACCATATCATTGGCCCGCGTAAATCACAGCATTTCCATATTTTCATGGGCAATGAATCACAGGA
GGCGTTGCTGAAAGAGATGGATAACTGGCCGACCTATTATCCGTATGCGCTGCATAAAGAACAGATCGTTGATGAGATGC
TGCACCACTAG

Upstream 100 bases:

>100_bases
TCCAGCGGTAAAAGCGCTTGCCTGTCGCTCTTGCCTCCCAGATAAGATATGTTATATCGTAACAATTTGTCGCCATTGAT
AGCAAACTCAGGAGAGAGTA

Downstream 100 bases:

>100_bases
AACGGGCGGAAAACCCCCGGCCGGGCGGCCGGGGAGAGATAGATTAACCGGTGTTACGCATACCGGCGGCGACGCCGGCG
ATGGTGACCATCAGCGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Cadmium-induced protein YodA [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTRKIPLLALGFGMALASAQAFAHGNHSHGPALTEVERQASEGIFADKDVQDRALSDWEGVWQSVNPYLLNGDLDPVLEQ
KAKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVGQTVNSCKYRYSGYKILHYASGKKGVRYLFECQQGDANAPK
FVQFSDHIIGPRKSQHFHIFMGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH

Sequences:

>Translated_216_residues
MTRKIPLLALGFGMALASAQAFAHGNHSHGPALTEVERQASEGIFADKDVQDRALSDWEGVWQSVNPYLLNGDLDPVLEQ
KAKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVGQTVNSCKYRYSGYKILHYASGKKGVRYLFECQQGDANAPK
FVQFSDHIIGPRKSQHFHIFMGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH
>Mature_215_residues
TRKIPLLALGFGMALASAQAFAHGNHSHGPALTEVERQASEGIFADKDVQDRALSDWEGVWQSVNPYLLNGDLDPVLEQK
AKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVGQTVNSCKYRYSGYKILHYASGKKGVRYLFECQQGDANAPKF
VQFSDHIIGPRKSQHFHIFMGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH

Specific function: May be involved in stress response [H]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=216, Percent_Identity=59.7222222222222, Blast_Score=286, Evalue=6e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 24526; Mature: 24395

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKIPLLALGFGMALASAQAFAHGNHSHGPALTEVERQASEGIFADKDVQDRALSDWEG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
VWQSVNPYLLNGDLDPVLEQKAKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVG
HHHCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEECC
QTVNSCKYRYSGYKILHYASGKKGVRYLFECQQGDANAPKFVQFSDHIIGPRKSQHFHIF
CCHHHHEEEECCEEEEEECCCCCCCEEHEEECCCCCCCCCEEEECCCCCCCCCCCEEEEE
MGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH
ECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRKIPLLALGFGMALASAQAFAHGNHSHGPALTEVERQASEGIFADKDVQDRALSDWEG
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
VWQSVNPYLLNGDLDPVLEQKAKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVG
HHHCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEECC
QTVNSCKYRYSGYKILHYASGKKGVRYLFECQQGDANAPKFVQFSDHIIGPRKSQHFHIF
CCHHHHEEEECCEEEEEECCCCCCCEEHEEECCCCCCCCCEEEECCCCCCCCCCCEEEEE
MGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH
ECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]