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The map label for this gene is rhaS [H]

Identifier: 238892318

GI number: 238892318

Start: 67171

End: 68157

Strand: Reverse

Name: rhaS [H]

Synonym: KP1_0069

Alternate gene names: 238892318

Gene position: 68157-67171 (Counterclockwise)

Preceding gene: 238892319

Following gene: 238892317

Centisome position: 1.3

GC content: 58.16

Gene sequence:

>987_bases
ATGAAAACAAAGACAAGCTTGATCCTCACCGTTGCCGCCCTGGCGTTGTCCGGTTCCGCCTTAGCCGAAGTTAAAATCGC
CCTTGTGGCGAAATCGCTGGGAAATGGCTTCTTCGAAGCCGCCAACGTTGGCGCCCAACAGGCAGCCAAGGAGTTAGGTG
ATGTCAAAGTGATCTACACCGGCCCGACCACTACCACCGCCGAGGCGCAGATCGACGTGCTGAACGGGTTGATCGCCCAG
GGGGTGGATGCGATCGCCATTTCCGCCAACGATCCGGACGCGGTGGTGCCGGTGCTGAAAAAAGCGATGCAGCGCGGCAT
CAAGGTGGTCTCATGGGACTCCGGCGTGGCGCCGGCAGGCCGTCAGATCCATCTTAACCCCTCAAATAACGCCTTAATTG
GCGAAACCAACGTCAAGCTTGCCGCCGATGCGCTGCAGGCGCTGAACGTTGAGAAAGGCGAGGTGGCCGTGTTAAGCGCC
ACCCCAACCTCCACGAACCAGAACATCTGGATTGAGGAGATGAAAAAGGTGCTACCGCAGTATCCGTCGGTGCAGCTGGT
CACCGTCGCCTACGGTGACGATCTGTCGGATAAAAGCTACCGCGAAGCGGTGGGTCTGCTGAAATCATATCCGGACCTGA
AAGTCATTGTCTCGCCGTCGTCGGTGGGGATTGTTGCCGCCGCGCAGGCGGTGAAGGACCAGGGCAAAATCGGCAAAGTG
TATGTCACCGGGCTGGGGCTGCCGTCGGAAATGGCCGGCGCGATCAAGTCCGGCGCCAGCAAAAGCTTCGCCATCTGGAA
CCCGATTGACCTGGGTTACGCCGCCACCTATCTGGCCGACGATTTAGTCAAAGGCACGGCGACCAAAACCGAAGCCAGTA
TGGGCAAGCTGGGCAAAGTGAAGCTGGACGCCGAGGGGAATGGCGCGATGGCCAAGCCGTTTGTCTACGATGCGAACAAC
ATCGATAAGTTCTCGAAAATTTTCTAA

Upstream 100 bases:

>100_bases
TTTAGATCTTTATCCATAACAACATCGCGCCCCGCTCACCGAGACGGGGCGAAATATCACCTGCAAACCCTACAAAACTA
ACTCATGTGGAGTAAAAGCA

Downstream 100 bases:

>100_bases
TCCTTGTTCCCTCACCCCGGCCCTCTCCCGGAGGGAGAGGGGGAACGGCTGGCCCTCTGCGCGATGCGGCCAGCGGACGC
CGGACCGTTCCCTCGCCCCT

Product: rhamnose transport system substrate-binding component

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYTGPTTTTAEAQIDVLNGLIAQ
GVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQIHLNPSNNALIGETNVKLAADALQALNVEKGEVAVLSA
TPTSTNQNIWIEEMKKVLPQYPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKV
YVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKVKLDAEGNGAMAKPFVYDANN
IDKFSKIF

Sequences:

>Translated_328_residues
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYTGPTTTTAEAQIDVLNGLIAQ
GVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQIHLNPSNNALIGETNVKLAADALQALNVEKGEVAVLSA
TPTSTNQNIWIEEMKKVLPQYPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKV
YVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKVKLDAEGNGAMAKPFVYDANN
IDKFSKIF
>Mature_328_residues
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYTGPTTTTAEAQIDVLNGLIAQ
GVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQIHLNPSNNALIGETNVKLAADALQALNVEKGEVAVLSA
TPTSTNQNIWIEEMKKVLPQYPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKV
YVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKVKLDAEGNGAMAKPFVYDANN
IDKFSKIF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=336, Percent_Identity=35.1190476190476, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1790526, Length=271, Percent_Identity=26.5682656826568, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34061; Mature: 34061

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCEEEEEE
GPTTTTAEAQIDVLNGLIAQGVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAG
CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
RQIHLNPSNNALIGETNVKLAADALQALNVEKGEVAVLSATPTSTNQNIWIEEMKKVLPQ
CEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHCCC
YPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKV
CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
YVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKV
EEEECCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEE
KLDAEGNGAMAKPFVYDANNIDKFSKIF
EEECCCCCCCCCCEEECCCCCHHHHHCC
>Mature Secondary Structure
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCEEEEEE
GPTTTTAEAQIDVLNGLIAQGVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAG
CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
RQIHLNPSNNALIGETNVKLAADALQALNVEKGEVAVLSATPTSTNQNIWIEEMKKVLPQ
CEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHCCC
YPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKV
CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
YVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKV
EEEECCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEE
KLDAEGNGAMAKPFVYDANNIDKFSKIF
EEECCCCCCCCCCEEECCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA