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The map label for this gene is rhaD [H]

Identifier: 238892319

GI number: 238892319

Start: 68239

End: 69069

Strand: Reverse

Name: rhaD [H]

Synonym: KP1_0070

Alternate gene names: 238892319

Gene position: 69069-68239 (Counterclockwise)

Preceding gene: 238892320

Following gene: 238892318

Centisome position: 1.32

GC content: 60.53

Gene sequence:

>831_bases
ATGCAGACCATTATCGACGCCTGGTTCGTCCAGGGCATGATCAAAGCCACCTCCGACGCCTGGCTGAAAGGCTGGGACGA
ACGCAACGGCGGCAACCTGACGCTGCGTCTGGATGAAGCGGATATCGAACCTTACGCGGCGGATTTCCACGCCCAACCGC
GCTATATCGCCCTCAGCCAGCCGATGCCAACCCTGGCCAACCAGCCGTTTATCGTCACCGGCTCCGGCAAATTCTTCCGT
AACGTCCAGCTCGACCCGGCCGCTAACCTCGGCATGGTGAAGGTCGACAGCGACGGCGCGGGATACCATATCCTGTGGGG
CCTGACGGAGGATGCCGTCCCGACCTCCGAGCTGCCGGCACACTTCCTGTCGCACAGCGAGCGCATCAAACTGACCGGCG
GCAAAGACCGGGTGATCATGCACTGCCATGCCACCAACCTGATCGCCCTGACCTATGTTCTGGAGAACCACAGCGATCTT
TTCACCCGTAAGCTGTGGGAAGGTAGCACCGAATGTCTGGTGGTCTTCCCGGATGGCGTCGGCATTCTGCCGTGGATGGT
GCCGGGCACCGATGAAATCGGCCAGGCAACCGCCGAAACCATGCAAAAACACTCGCTTGTGCTGTGGCCGTTCCACGGCG
TCTTCGGCAGCGGCCCCACGCTGGATGAGACCTTCGGCCTGATCGATACCGCCGAGAAGTCCGCCGAAGTGCTGGTGAAA
GTCTTGTCGATGGGCGGGATGAAGCAGACCATCACCCGCGACGAGCTTATCGCCCTTGGCAAACGCTTCAACGTGCAGCC
GCTGCAGTCCGCTTTAGATCTTTATCCATAA

Upstream 100 bases:

>100_bases
CGGTAGCCCGGATAAGCCGTTTACGGCGCAATCCGGGGGCACGCACATATTTAGGGTGAGGGGGTCAACCCCGCACCGAA
TCAACAGGAAAGACAAGACT

Downstream 100 bases:

>100_bases
CAACATCGCGCCCCGCTCACCGAGACGGGGCGAAATATCACCTGCAAACCCTACAAAACTAACTCATGTGGAGTAAAAGC
AATGAAAACAAAGACAAGCT

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAQPRYIALSQPMPTLANQPFIVTGSGKFFR
NVQLDPAANLGMVKVDSDGAGYHILWGLTEDAVPTSELPAHFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDL
FTRKLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVK
VLSMGGMKQTITRDELIALGKRFNVQPLQSALDLYP

Sequences:

>Translated_276_residues
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAQPRYIALSQPMPTLANQPFIVTGSGKFFR
NVQLDPAANLGMVKVDSDGAGYHILWGLTEDAVPTSELPAHFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDL
FTRKLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVK
VLSMGGMKQTITRDELIALGKRFNVQPLQSALDLYP
>Mature_276_residues
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAQPRYIALSQPMPTLANQPFIVTGSGKFFR
NVQLDPAANLGMVKVDSDGAGYHILWGLTEDAVPTSELPAHFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDL
FTRKLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVK
VLSMGGMKQTITRDELIALGKRFNVQPLQSALDLYP

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=274, Percent_Identity=87.2262773722628, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 30420; Mature: 30420

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAQPRYIALSQ
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCEEEECC
PMPTLANQPFIVTGSGKFFRNVQLDPAANLGMVKVDSDGAGYHILWGLTEDAVPTSELPA
CCCHHCCCCEEEEECCCEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHH
HFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDLFTRKLWEGSTECLVVFPDGV
HHHCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCC
GILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVK
CCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
VLSMGGMKQTITRDELIALGKRFNVQPLQSALDLYP
HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAQPRYIALSQ
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCEEEECC
PMPTLANQPFIVTGSGKFFRNVQLDPAANLGMVKVDSDGAGYHILWGLTEDAVPTSELPA
CCCHHCCCCEEEEECCCEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHH
HFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDLFTRKLWEGSTECLVVFPDGV
HHHCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCC
GILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVK
CCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
VLSMGGMKQTITRDELIALGKRFNVQPLQSALDLYP
HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA