Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is mreD [C]

Identifier: 238028931

GI number: 238028931

Start: 3859512

End: 3860024

Strand: Direct

Name: mreD [C]

Synonym: bglu_1g33960

Alternate gene names: 238028931

Gene position: 3859512-3860024 (Clockwise)

Preceding gene: 238028930

Following gene: 238028932

Centisome position: 98.8

GC content: 68.03

Gene sequence:

>513_bases
ATGAGCCGTCCGCAATACATCCTGCAGCCGGTCAATCCCTATTTCATCGCCTTCAGCCTCTCGGCCGCGTTCCTGCTGAA
CCTGATGCCGTGGGGGCGCCTGCCCGGCGTGCCCGACTTCGTCGCCGTGGTGCTGCTGTTCTGGAACATTCACCAGCCGC
GCAAGGTCGGCATGGGCGTGGCGTTCCTGCTCGGCATCCTGATGGACGTCCACGACGCGGGGCTGCTCGGCGAGCACGCG
CTCGCCTACACGCTGCTGTCGTATGGCGCGATCACGATCCACCGCCGCGTGCTGTGGCTTTCGCTCGGCGCGCAGGTGTT
CTACGTGGCGCCGCTGCTGGTGGTGGCCCAGCTCGTGCCGTTCATGATCCGCCTCGTGATGGGCGCCGCGTTCCCGGGCT
GGAGCTATCTCGTCGACGGGTTCGTCGAGGCCGGGCTCTGGCCGCTCGCGAGCCTCCTGCTGTTGATGCCGCAACGCCGC
CCGGTCGACCCGGACGACACGCGGCCGATCTGA

Upstream 100 bases:

>100_bases
CGGGCGAGAAGCCGGCCGGAAAATCCGCCGCGCCGGCCGCCGCCAGACCGGCAGCGCGCCCCGCGGCCCCGGCCGCCGCC
CCGTCCCGCGGAGCGCAGCC

Downstream 100 bases:

>100_bases
CCCGCACGGCCGCCGCATGCCGAGCGCCCCGCCACCGGCCATCGCCGCGAGCCCCGACACCCGTGCGCAGCCGGCACGAC
CGCTTTTCTCCAGACTCGCA

Product: Rod shape-determining protein MreD

Products: NA

Alternate protein names: Rod Shape-Determining MreD Transmembrane Protein; Rod Shape-Determining Protein; MreD Rod Shape-Determining Protein; Rod Shape-Determining MreD; Rod Shape-Determining Protein Mred; Rod Shape-Determining MRED Transmembrane Protein

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHA
LAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRR
PVDPDDTRPI

Sequences:

>Translated_170_residues
MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHA
LAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRR
PVDPDDTRPI
>Mature_169_residues
SRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHAL
AYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRP
VDPDDTRPI

Specific function: Involved In Formation Of The Rod Shape Of The Cell. May Also Contribute To Regulation Of Formation Of Penicillin-Binding Proteins. [C]

COG id: COG2891

COG function: function code M; Cell shape-determining protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18909; Mature: 18778

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGV
CCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
AFLLGILMDVHDAGLLGEHALAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRPVDPDDTRPI
HHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGV
CCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
AFLLGILMDVHDAGLLGEHALAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRPVDPDDTRPI
HHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA