| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is mreD [C]
Identifier: 238028931
GI number: 238028931
Start: 3859512
End: 3860024
Strand: Direct
Name: mreD [C]
Synonym: bglu_1g33960
Alternate gene names: 238028931
Gene position: 3859512-3860024 (Clockwise)
Preceding gene: 238028930
Following gene: 238028932
Centisome position: 98.8
GC content: 68.03
Gene sequence:
>513_bases ATGAGCCGTCCGCAATACATCCTGCAGCCGGTCAATCCCTATTTCATCGCCTTCAGCCTCTCGGCCGCGTTCCTGCTGAA CCTGATGCCGTGGGGGCGCCTGCCCGGCGTGCCCGACTTCGTCGCCGTGGTGCTGCTGTTCTGGAACATTCACCAGCCGC GCAAGGTCGGCATGGGCGTGGCGTTCCTGCTCGGCATCCTGATGGACGTCCACGACGCGGGGCTGCTCGGCGAGCACGCG CTCGCCTACACGCTGCTGTCGTATGGCGCGATCACGATCCACCGCCGCGTGCTGTGGCTTTCGCTCGGCGCGCAGGTGTT CTACGTGGCGCCGCTGCTGGTGGTGGCCCAGCTCGTGCCGTTCATGATCCGCCTCGTGATGGGCGCCGCGTTCCCGGGCT GGAGCTATCTCGTCGACGGGTTCGTCGAGGCCGGGCTCTGGCCGCTCGCGAGCCTCCTGCTGTTGATGCCGCAACGCCGC CCGGTCGACCCGGACGACACGCGGCCGATCTGA
Upstream 100 bases:
>100_bases CGGGCGAGAAGCCGGCCGGAAAATCCGCCGCGCCGGCCGCCGCCAGACCGGCAGCGCGCCCCGCGGCCCCGGCCGCCGCC CCGTCCCGCGGAGCGCAGCC
Downstream 100 bases:
>100_bases CCCGCACGGCCGCCGCATGCCGAGCGCCCCGCCACCGGCCATCGCCGCGAGCCCCGACACCCGTGCGCAGCCGGCACGAC CGCTTTTCTCCAGACTCGCA
Product: Rod shape-determining protein MreD
Products: NA
Alternate protein names: Rod Shape-Determining MreD Transmembrane Protein; Rod Shape-Determining Protein; MreD Rod Shape-Determining Protein; Rod Shape-Determining MreD; Rod Shape-Determining Protein Mred; Rod Shape-Determining MRED Transmembrane Protein
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHA LAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRR PVDPDDTRPI
Sequences:
>Translated_170_residues MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHA LAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRR PVDPDDTRPI >Mature_169_residues SRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGVAFLLGILMDVHDAGLLGEHAL AYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVPFMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRP VDPDDTRPI
Specific function: Involved In Formation Of The Rod Shape Of The Cell. May Also Contribute To Regulation Of Formation Of Penicillin-Binding Proteins. [C]
COG id: COG2891
COG function: function code M; Cell shape-determining protein
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18909; Mature: 18778
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGV CCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH AFLLGILMDVHDAGLLGEHALAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRPVDPDDTRPI HHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SRPQYILQPVNPYFIAFSLSAAFLLNLMPWGRLPGVPDFVAVVLLFWNIHQPRKVGMGV CCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH AFLLGILMDVHDAGLLGEHALAYTLLSYGAITIHRRVLWLSLGAQVFYVAPLLVVAQLVP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FMIRLVMGAAFPGWSYLVDGFVEAGLWPLASLLLLMPQRRPVDPDDTRPI HHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA