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The map label for this gene is yqhC [H]

Identifier: 238028922

GI number: 238028922

Start: 3849274

End: 3850221

Strand: Reverse

Name: yqhC [H]

Synonym: bglu_1g33870

Alternate gene names: 238028922

Gene position: 3850221-3849274 (Counterclockwise)

Preceding gene: 238028924

Following gene: 238028914

Centisome position: 98.56

GC content: 70.68

Gene sequence:

>948_bases
ATGAGCTTCGAACCCCTCATACCGGACGGCGACCTGCGCGTGCAGCGGCGCATGATCGAGCTGATCGACCGGCTCGCGCC
GAACAACGGCTCGACCGACGCGGCGCTCGAAGGCGTGCGCTTCCTGCGCGTGGGCGCCCGCGTGCCGCGCTGCCCGGTGC
TCTACGAGCCGAGCATCGTGATCGTCTGCCAGGGCCGCAAGGTCGGCTACGTCGGCGAGCGCACGTTCGTCTACGACGAA
CGCCAGTATCTGGTGCTGTCGGTGCCGCTGCCGTTCGAATGCGAAACCTACACGGCGCCGCACGGCCCGTTCCTGGCGAT
CTCGGTGCGCATCGACCTCGGCGTGATCGCCGAGCTCGCGATGCTGCTGGAGGAAACCCACGGCGCGTCCGCGAGCGAGC
CGGACAGCATCTGCTCGACGCCGCTTGGCGCGCCGCTCGCCGACGCGGTGCTGCGCCTGCTCGAAGCGCTGCAGTCGCCG
CACGACACGCGCGTGCTCGGCCCCTCGATCATGCGCGAGATCGGCTACCGCGTGCTGACGGGCGAGCGCGGCGACGCGAT
CCGCGCGGCGCTCGGCCAGCGACATCACTTCGGGCGCATCGCCAAGGCGCTGCGGCGCATCCACCTCGATCTCGGCGGCG
AGCATTCGATCGACGCGCTCGCGGCCGAGGCGGGCATGAGTGCCGCGGTGTTCCACACGCATTTCCGCAGCGTGACGGGC
ACCTCGCCGATGCAGTACGTGAAGGCCACTCGGCTGCACAACGCGCGGCTGATGATGGTGCAGGAAGGCGTCAGCGCCGC
CGCGGCCGCCGCGCGCGTCGGCTATGCGAGCGCCTCGCAGTTCAGCCGCGAGTTCAAGCGCATGTTCGGCCGCAGCCCCG
GCGACGAGGTCCGCTGGGTGCAGGCCAACGGCCTCGTCGTGAACGGCGAGCCGGCCGAGATCAACTGA

Upstream 100 bases:

>100_bases
AGCTTTGCCTATTCCTCTCGATTTGCGAAAATGCGCCACGCACCGGCCGGGCGCGGTGCTAGATTGCAAGCCTGATCCTA
TTACCGGCAACGAACGCGCA

Downstream 100 bases:

>100_bases
CGGGCGAGGCGGGGCGGCGGCGCACCGCGCCGATGCCGGCATAGGGCGGCAGGGCCTCGACGCGCTTGCCGATCGCCTTC
GCGTAGACCGGCATCAGGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSFEPLIPDGDLRVQRRMIELIDRLAPNNGSTDAALEGVRFLRVGARVPRCPVLYEPSIVIVCQGRKVGYVGERTFVYDE
RQYLVLSVPLPFECETYTAPHGPFLAISVRIDLGVIAELAMLLEETHGASASEPDSICSTPLGAPLADAVLRLLEALQSP
HDTRVLGPSIMREIGYRVLTGERGDAIRAALGQRHHFGRIAKALRRIHLDLGGEHSIDALAAEAGMSAAVFHTHFRSVTG
TSPMQYVKATRLHNARLMMVQEGVSAAAAAARVGYASASQFSREFKRMFGRSPGDEVRWVQANGLVVNGEPAEIN

Sequences:

>Translated_315_residues
MSFEPLIPDGDLRVQRRMIELIDRLAPNNGSTDAALEGVRFLRVGARVPRCPVLYEPSIVIVCQGRKVGYVGERTFVYDE
RQYLVLSVPLPFECETYTAPHGPFLAISVRIDLGVIAELAMLLEETHGASASEPDSICSTPLGAPLADAVLRLLEALQSP
HDTRVLGPSIMREIGYRVLTGERGDAIRAALGQRHHFGRIAKALRRIHLDLGGEHSIDALAAEAGMSAAVFHTHFRSVTG
TSPMQYVKATRLHNARLMMVQEGVSAAAAAARVGYASASQFSREFKRMFGRSPGDEVRWVQANGLVVNGEPAEIN
>Mature_314_residues
SFEPLIPDGDLRVQRRMIELIDRLAPNNGSTDAALEGVRFLRVGARVPRCPVLYEPSIVIVCQGRKVGYVGERTFVYDER
QYLVLSVPLPFECETYTAPHGPFLAISVRIDLGVIAELAMLLEETHGASASEPDSICSTPLGAPLADAVLRLLEALQSPH
DTRVLGPSIMREIGYRVLTGERGDAIRAALGQRHHFGRIAKALRRIHLDLGGEHSIDALAAEAGMSAAVFHTHFRSVTGT
SPMQYVKATRLHNARLMMVQEGVSAAAAAARVGYASASQFSREFKRMFGRSPGDEVRWVQANGLVVNGEPAEIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=294, Percent_Identity=43.1972789115646, Blast_Score=245, Evalue=3e-66,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34335; Mature: 34204

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFEPLIPDGDLRVQRRMIELIDRLAPNNGSTDAALEGVRFLRVGARVPRCPVLYEPSIV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCEE
IVCQGRKVGYVGERTFVYDERQYLVLSVPLPFECETYTAPHGPFLAISVRIDLGVIAELA
EEECCCEECCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHH
MLLEETHGASASEPDSICSTPLGAPLADAVLRLLEALQSPHDTRVLGPSIMREIGYRVLT
HHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCEEEE
GERGDAIRAALGQRHHFGRIAKALRRIHLDLGGEHSIDALAAEAGMSAAVFHTHFRSVTG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
TSPMQYVKATRLHNARLMMVQEGVSAAAAAARVGYASASQFSREFKRMFGRSPGDEVRWV
CCHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEE
QANGLVVNGEPAEIN
EECCEEECCCCCCCC
>Mature Secondary Structure 
SFEPLIPDGDLRVQRRMIELIDRLAPNNGSTDAALEGVRFLRVGARVPRCPVLYEPSIV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCEE
IVCQGRKVGYVGERTFVYDERQYLVLSVPLPFECETYTAPHGPFLAISVRIDLGVIAELA
EEECCCEECCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHH
MLLEETHGASASEPDSICSTPLGAPLADAVLRLLEALQSPHDTRVLGPSIMREIGYRVLT
HHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCEEEE
GERGDAIRAALGQRHHFGRIAKALRRIHLDLGGEHSIDALAAEAGMSAAVFHTHFRSVTG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
TSPMQYVKATRLHNARLMMVQEGVSAAAAAARVGYASASQFSREFKRMFGRSPGDEVRWV
CCHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEE
QANGLVVNGEPAEIN
EECCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]