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The map label for this gene is dppB [H]

Identifier: 238028869

GI number: 238028869

Start: 3792252

End: 3793262

Strand: Reverse

Name: dppB [H]

Synonym: bglu_1g33340

Alternate gene names: 238028869

Gene position: 3793262-3792252 (Counterclockwise)

Preceding gene: 238028870

Following gene: 238028868

Centisome position: 97.1

GC content: 67.75

Gene sequence:

>1011_bases
ATGCTGCGATTTGTGTTGCGCCGCGTCGGCATGGTGATTCCGACCTTCATCGGCATCACCATCCTCGCGTTCGCGCTGAT
CCATCTGATCCCGGGCGATCCCATCGAAGTGATGATGGGCGAGCGCGGCGTCGATCCGGCGATGCACGCCGAGGCGATGC
ACCGCCTCGGCCTCGACCAGCCGCTGCCGCTGCAGTATTTCCACTATATCGGCCGGGCGCTGCACGGCGACCTGGGCCTG
TCGATCATCACCAACACCAGCGTGATGGACGAGTTCCTGGCGCGCTTCCCGGCCACCGTCGAGCTGTCGATCTGCGCGCT
CGCCTTCGCGCTGCTGGTGGGCCTGCCGGCCGGCGTGTTCGCGGCGCTGCGGCGCGGCACGCTGGTCGACCACGGCGTGA
TGGGCACCGCCCTCGCCGGCTACTCGATGCCGATCTTCTGGTGGGGCTTGATCCTGATCATGGTGTTCTCGTCGACGCTC
GGCTGGACTCCGGTGTCGGGCCGCATCGCCGTCGAATTCGACATCCCGCACGTCACCGGCTTCATGCTGATCGACGCGCT
GCTCGCGCCCGACCAGGGCGCGTTCCGCTCGGCGGTGAGCCACCTGATCCTGCCGTCGATCGTGCTCGGCACGATTCCGC
TCGCGGTGATCGCGCGCATGACGCGCTCCTCGATGCTCGAAGTGCTGCGCGAGGACTACATCCGCACCGCGCGCGCCAAG
GGCCTGTCGCCGGCGCGCGTGGTGGTGGTGCATGCGCTGCGCAACGCGCTGATCCCGGTGGTCACCGTGATCGGGCTGCA
GATCGGCACGCTGCTCGCGGGCGCGGTGCTGACCGAGACGCTGTTCTCGTGGCCCGGGGTCGGCAAATGGCTGATCGACG
CGATCGGCCGGCGCGACTATCCGGTCGTGCAGGGCGGCATCCTGCTGATCGCCACGCTCGTGATCATCGTCAATCTCGTC
GTCGATCTGCTCTACGGCGTGCTCAACCCCCGCATCCGCCATACGAGGTGA

Upstream 100 bases:

>100_bases
CGCACCGTTGCACCGACTGCACGATAATTGATCCGGCGACGGGGGGCTTGGCCCCTCGTCGCCGGACGCACTTCACCCCC
ACGATTTTTCGAGATCCGCC

Downstream 100 bases:

>100_bases
CCCGATGAGCGAACTCCCCGATGTGCTGCCGGCGGCCCGCGCCGGCGGCCGCGCGCTCGCGCTGCAGGAATTCTGGCGCA
ACTTCTCGCGCAACCGCGGC

Product: Binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMHRLGLDQPLPLQYFHYIGRALHGDLGL
SIITNTSVMDEFLARFPATVELSICALAFALLVGLPAGVFAALRRGTLVDHGVMGTALAGYSMPIFWWGLILIMVFSSTL
GWTPVSGRIAVEFDIPHVTGFMLIDALLAPDQGAFRSAVSHLILPSIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIIVNLV
VDLLYGVLNPRIRHTR

Sequences:

>Translated_336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMHRLGLDQPLPLQYFHYIGRALHGDLGL
SIITNTSVMDEFLARFPATVELSICALAFALLVGLPAGVFAALRRGTLVDHGVMGTALAGYSMPIFWWGLILIMVFSSTL
GWTPVSGRIAVEFDIPHVTGFMLIDALLAPDQGAFRSAVSHLILPSIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIIVNLV
VDLLYGVLNPRIRHTR
>Mature_336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMHRLGLDQPLPLQYFHYIGRALHGDLGL
SIITNTSVMDEFLARFPATVELSICALAFALLVGLPAGVFAALRRGTLVDHGVMGTALAGYSMPIFWWGLILIMVFSSTL
GWTPVSGRIAVEFDIPHVTGFMLIDALLAPDQGAFRSAVSHLILPSIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIIVNLV
VDLLYGVLNPRIRHTR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=64.306784660767, Blast_Score=446, Evalue=1e-126,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=42.089552238806, Blast_Score=264, Evalue=6e-72,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=47.4683544303797, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=36.9047619047619, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=39.7810218978102, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=35.2238805970149, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1788504, Length=371, Percent_Identity=26.4150943396226, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36437; Mature: 36437

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMHRLGLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPLQYFHYIGRALHGDLGLSIITNTSVMDEFLARFPATVELSICALAFALLVGLPAGVF
CCCHHHHHHHHHHHHCCCCHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
AALRRGTLVDHGVMGTALAGYSMPIFWWGLILIMVFSSTLGWTPVSGRIAVEFDIPHVTG
HHHHHCCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FMLIDALLAPDQGAFRSAVSHLILPSIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILLIATLVIIVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMHRLGLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPLQYFHYIGRALHGDLGLSIITNTSVMDEFLARFPATVELSICALAFALLVGLPAGVF
CCCHHHHHHHHHHHHCCCCHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
AALRRGTLVDHGVMGTALAGYSMPIFWWGLILIMVFSSTLGWTPVSGRIAVEFDIPHVTG
HHHHHCCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FMLIDALLAPDQGAFRSAVSHLILPSIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILLIATLVIIVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]