| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028748
Identifier: 238028748
GI number: 238028748
Start: 3647282
End: 3648484
Strand: Reverse
Name: 238028748
Synonym: bglu_1g32120
Alternate gene names: NA
Gene position: 3648484-3647282 (Counterclockwise)
Preceding gene: 238028749
Following gene: 238028747
Centisome position: 93.4
GC content: 75.23
Gene sequence:
>1203_bases ATGACGGCCGGCGCGTCGCCGCCGCGAGCCGCGCCCCATGCCTCGTCGCTCGGGCGGCGGCTGTTCGCGGCCTACGCCGC GCTGATCGTCTACGCCTCGCTGTATCCGTTCTCCGGCTGGCGCTCGCTCGGCGTCGGCGCGTTCGACTATCTGTTCGCGC CGATGCCGCGCTACTGGACCGGCTTCGACGTGGTCACCAACGTGCTCGGCTACCTGCCGCTCGGCGTGCTCGCGGTGGGC GCGCTGCATCCGCGCGTGCGCGGGCCGGCCGCCGTGCTTGCCGCGACGCTGTTCGGCACCCTGGTGTCGGGCGCGATGGA GGCGCTGCAGACCTATCTGCCCACCCGCGTCGCCTCGAATCTCGATCTCGGCGCCAATGCGCTCGGCGCCCTGCTCGGCG CGCTGCTGGCGGCGCCCGCCGTGCCGGCGCTGATCGAGCGCGGCATGCTGCGCCGGCTGCGCGACGCGTGGTTCGAGCGC GACGCGGCCACGCCGCTGCTGCTGTCGGCGCTGTGGCCGTTCGCGGTGCTGTTCCCGTCGCCGTTCCTGTTCGGCATCGG CAGCTGGCCGAGCGAGCTGTGGGATCGCGCCGACGTGTCGATGCGCGCCGCGCTGCTGGCCTGGGCGCCGGCCGGCTGGC GCGTGGCGGGCTGGTCCGACGCGTTCTACGCGCTCGACGCGCGCCTGTCGGCCACCGCCTGGGAGGCCCTGCTCGCCGCG CTGGGCCTGTTCGCGGCGCTCGCGCTCGCGTCGCTGACGATGCGCCGCGAGGCGCCGCGCCAGCGTCTCGTGATCGGCTT CGTCGCCGTGGTTCTGGTGCTCAAGCTGGCCGCCACCTTCGTGCAGTCGCGCAGCGGCCTGGCGTTCGACTGGGCCACGC CGGGCGGCTGCGCGGGCATCGCGCTGGGCCTCGAGGCCGGCCTCGCCGCGCTGCGCCTGCGCGCGGTCTGGCGCGCCACG GCCGCCGCCGCAGCGCTCACCGTCTCGCTCGTGCTCGTCAACGTGCTGCCGGTGAACCCGTTTTTCGACTACACGCTGTC GGGCTGGAGCCAGGGCCGCTACCTGCACTTCAACGGCATCGCGCGCTGGCTGGCGTGGATCTGGCCTTACGCGGCGCTGA TCTGGCTCGCGTGGCGCGCCGAGCGCGGCTGGCTCGGCCGCCGCGCGCGCGGCCGGGACGGCGCGAAACGCGAGGGCCGC TGA
Upstream 100 bases:
>100_bases AGCAACGAGCTCGTCGGGCAGCTGGTGGCATGGCTCGCGGTGCAGGCCAGCGCCTCGCCATGACGCGCGCGGCGCCGGCC ACGACCCTGCTGCGGCCGCG
Downstream 100 bases:
>100_bases GCGGCTGGGCGGCAAGCTGCCCGCGCCGGCCGGCCACGCGCGCATCACGAAAAGACCGGCGCCCGTCACGAAAACGACAT CCGCGAGCGGCCTCAGCGGC
Product: VanZ like protein
Products: NA
Alternate protein names: VanZ Like Protein; Transmembrane Protein
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MTAGASPPRAAPHASSLGRRLFAAYAALIVYASLYPFSGWRSLGVGAFDYLFAPMPRYWTGFDVVTNVLGYLPLGVLAVG ALHPRVRGPAAVLAATLFGTLVSGAMEALQTYLPTRVASNLDLGANALGALLGALLAAPAVPALIERGMLRRLRDAWFER DAATPLLLSALWPFAVLFPSPFLFGIGSWPSELWDRADVSMRAALLAWAPAGWRVAGWSDAFYALDARLSATAWEALLAA LGLFAALALASLTMRREAPRQRLVIGFVAVVLVLKLAATFVQSRSGLAFDWATPGGCAGIALGLEAGLAALRLRAVWRAT AAAAALTVSLVLVNVLPVNPFFDYTLSGWSQGRYLHFNGIARWLAWIWPYAALIWLAWRAERGWLGRRARGRDGAKREGR
Sequences:
>Translated_400_residues MTAGASPPRAAPHASSLGRRLFAAYAALIVYASLYPFSGWRSLGVGAFDYLFAPMPRYWTGFDVVTNVLGYLPLGVLAVG ALHPRVRGPAAVLAATLFGTLVSGAMEALQTYLPTRVASNLDLGANALGALLGALLAAPAVPALIERGMLRRLRDAWFER DAATPLLLSALWPFAVLFPSPFLFGIGSWPSELWDRADVSMRAALLAWAPAGWRVAGWSDAFYALDARLSATAWEALLAA LGLFAALALASLTMRREAPRQRLVIGFVAVVLVLKLAATFVQSRSGLAFDWATPGGCAGIALGLEAGLAALRLRAVWRAT AAAAALTVSLVLVNVLPVNPFFDYTLSGWSQGRYLHFNGIARWLAWIWPYAALIWLAWRAERGWLGRRARGRDGAKREGR >Mature_399_residues TAGASPPRAAPHASSLGRRLFAAYAALIVYASLYPFSGWRSLGVGAFDYLFAPMPRYWTGFDVVTNVLGYLPLGVLAVGA LHPRVRGPAAVLAATLFGTLVSGAMEALQTYLPTRVASNLDLGANALGALLGALLAAPAVPALIERGMLRRLRDAWFERD AATPLLLSALWPFAVLFPSPFLFGIGSWPSELWDRADVSMRAALLAWAPAGWRVAGWSDAFYALDARLSATAWEALLAAL GLFAALALASLTMRREAPRQRLVIGFVAVVLVLKLAATFVQSRSGLAFDWATPGGCAGIALGLEAGLAALRLRAVWRATA AAAALTVSLVLVNVLPVNPFFDYTLSGWSQGRYLHFNGIARWLAWIWPYAALIWLAWRAERGWLGRRARGRDGAKREGR
Specific function: Unknown
COG id: COG5652
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42985; Mature: 42853
Theoretical pI: Translated: 11.31; Mature: 11.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGASPPRAAPHASSLGRRLFAAYAALIVYASLYPFSGWRSLGVGAFDYLFAPMPRYWT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCCCCCCC GFDVVTNVLGYLPLGVLAVGALHPRVRGPAAVLAATLFGTLVSGAMEALQTYLPTRVASN CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LDLGANALGALLGALLAAPAVPALIERGMLRRLRDAWFERDAATPLLLSALWPFAVLFPS CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC PFLFGIGSWPSELWDRADVSMRAALLAWAPAGWRVAGWSDAFYALDARLSATAWEALLAA HHHCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH LGLFAALALASLTMRREAPRQRLVIGFVAVVLVLKLAATFVQSRSGLAFDWATPGGCAGI HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH ALGLEAGLAALRLRAVWRATAAAAALTVSLVLVNVLPVNPFFDYTLSGWSQGRYLHFNGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEHHHH ARWLAWIWPYAALIWLAWRAERGWLGRRARGRDGAKREGR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TAGASPPRAAPHASSLGRRLFAAYAALIVYASLYPFSGWRSLGVGAFDYLFAPMPRYWT CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCCCCCCC GFDVVTNVLGYLPLGVLAVGALHPRVRGPAAVLAATLFGTLVSGAMEALQTYLPTRVASN CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LDLGANALGALLGALLAAPAVPALIERGMLRRLRDAWFERDAATPLLLSALWPFAVLFPS CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC PFLFGIGSWPSELWDRADVSMRAALLAWAPAGWRVAGWSDAFYALDARLSATAWEALLAA HHHCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH LGLFAALALASLTMRREAPRQRLVIGFVAVVLVLKLAATFVQSRSGLAFDWATPGGCAGI HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH ALGLEAGLAALRLRAVWRATAAAAALTVSLVLVNVLPVNPFFDYTLSGWSQGRYLHFNGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEHHHH ARWLAWIWPYAALIWLAWRAERGWLGRRARGRDGAKREGR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA