Click here to switch to the map view.

The map label for this gene is 238028694

Identifier: 238028694

GI number: 238028694

Start: 3593568

End: 3594179

Strand: Reverse

Name: 238028694

Synonym: bglu_1g31580

Alternate gene names: NA

Gene position: 3594179-3593568 (Counterclockwise)

Preceding gene: 238028695

Following gene: 238028693

Centisome position: 92.0

GC content: 71.41

Gene sequence:

>612_bases
ATGATGCCGCGCCCCATCCCGTCCACGCGGCGGCGCTGGCTGGCCGCCTGCGCCGCGGCCGGCGCGCTGCTGCTCGGCGG
CTGCAGCCGCCAGCCGGCCTTCGAGAATCTCGACATCACCGGCAACACGCAGTTCGGCCAGGACTTCGCGCTGCCCGACA
CCACCGGCCGCACGCGCACGCTCGCCGACTACAAGGGCCGCGCCGTGGTGCTGGTGTTCGGCTATACGCATTGCCCCGAC
GTCTGCCCGACCACGTTGGCCGAACTCGCGCAGGCGAGGCAGCAGCTCGGCGCCGAGGGCAAGCGCGTGCAGGTGCTGCT
CGTCACCGTCGATCCCGAGCGCGATACGGCGCCGCTTATCGCGCAGTACGTGGCCGCGTTCGATCCGTCGTTCGTCGCGC
TGCGCCCGGCCGGCGAGGCGCAGCTCAAGCAGGTGGCGAAGGACTTCCGGATCTATTACGCGAAATCGCCCGGCAAGACG
CCCGACGGCTACACGATGGACCACACGGCGGCGAGCTACGTGTTCGACCCGGCCGGCAAGCTGCGCCTGTTCGTGCGCGA
CGGGCAGGGGCCGGCGCCCTGGGTGCACGACCTGAGGCTGTTGCTGGGCTGA

Upstream 100 bases:

>100_bases
CGCGCGTTCCGCTACTCGATCGTCTATCTCTCGCTGCTGTTCATGGCGCTGCTCGTCGATCATTACCTGCGCCCGCTGCT
CGGCTTCTGAGCGCGCCGCG

Downstream 100 bases:

>100_bases
GCGGGCCGGCTTCGGCGTCCGCGAGTCGCCGCCGGGCGAAGCGAACGGCCCGCCCGCCACGGACCAGCGGGGTCCTGTCC
GTTCGCGGCCGCGCCGGCCG

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MMPRPIPSTRRRWLAACAAAGALLLGGCSRQPAFENLDITGNTQFGQDFALPDTTGRTRTLADYKGRAVVLVFGYTHCPD
VCPTTLAELAQARQQLGAEGKRVQVLLVTVDPERDTAPLIAQYVAAFDPSFVALRPAGEAQLKQVAKDFRIYYAKSPGKT
PDGYTMDHTAASYVFDPAGKLRLFVRDGQGPAPWVHDLRLLLG

Sequences:

>Translated_203_residues
MMPRPIPSTRRRWLAACAAAGALLLGGCSRQPAFENLDITGNTQFGQDFALPDTTGRTRTLADYKGRAVVLVFGYTHCPD
VCPTTLAELAQARQQLGAEGKRVQVLLVTVDPERDTAPLIAQYVAAFDPSFVALRPAGEAQLKQVAKDFRIYYAKSPGKT
PDGYTMDHTAASYVFDPAGKLRLFVRDGQGPAPWVHDLRLLLG
>Mature_203_residues
MMPRPIPSTRRRWLAACAAAGALLLGGCSRQPAFENLDITGNTQFGQDFALPDTTGRTRTLADYKGRAVVLVFGYTHCPD
VCPTTLAELAQARQQLGAEGKRVQVLLVTVDPERDTAPLIAQYVAAFDPSFVALRPAGEAQLKQVAKDFRIYYAKSPGKT
PDGYTMDHTAASYVFDPAGKLRLFVRDGQGPAPWVHDLRLLLG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=41.044776119403, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=41.044776119403, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=41.044776119403, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=41.044776119403, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI4759068, Length=143, Percent_Identity=36.3636363636364, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=145, Percent_Identity=28.9655172413793, Blast_Score=94, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=31.4685314685315, Blast_Score=92, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=34.2657342657343, Blast_Score=106, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22091; Mature: 22091

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPRPIPSTRRRWLAACAAAGALLLGGCSRQPAFENLDITGNTQFGQDFALPDTTGRTRT
CCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
LADYKGRAVVLVFGYTHCPDVCPTTLAELAQARQQLGAEGKRVQVLLVTVDPERDTAPLI
ECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHH
AQYVAAFDPSFVALRPAGEAQLKQVAKDFRIYYAKSPGKTPDGYTMDHTAASYVFDPAGK
HHHHHHCCCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCHHEEECCCCE
LRLFVRDGQGPAPWVHDLRLLLG
EEEEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MMPRPIPSTRRRWLAACAAAGALLLGGCSRQPAFENLDITGNTQFGQDFALPDTTGRTRT
CCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
LADYKGRAVVLVFGYTHCPDVCPTTLAELAQARQQLGAEGKRVQVLLVTVDPERDTAPLI
ECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHH
AQYVAAFDPSFVALRPAGEAQLKQVAKDFRIYYAKSPGKTPDGYTMDHTAASYVFDPAGK
HHHHHHCCCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCHHEEECCCCE
LRLFVRDGQGPAPWVHDLRLLLG
EEEEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA