| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ordL [H]
Identifier: 238028636
GI number: 238028636
Start: 3524344
End: 3525648
Strand: Direct
Name: ordL [H]
Synonym: bglu_1g31000
Alternate gene names: 238028636
Gene position: 3524344-3525648 (Clockwise)
Preceding gene: 238028635
Following gene: 238028645
Centisome position: 90.22
GC content: 72.87
Gene sequence:
>1305_bases ATGACACCGACTTTCCTCCAGCATGCGGACGCGCTCGCGCGTCACTCCTACTACGAAGCCACCGCCGCGCGCCCGACAGC CGACGATCCCGTGCTCGACGGCCCGCTCGAGGCCGACGTCTGCGTGATCGGCGCCGGCTTCTCGGGGCTCTCGGTCGCGC TCGACTGCCGCGCGGCGGGGCTCTCGGTGGTCGTGCTCGAGGCCTGGCGCCCCGGCTGGGGCGCCTCGGGCCGCAACGGC GGCCAGGTGATCGGCGGCTTCGCGAAGGACGCCGAGATCGCACGCCAGCTCGGCGAGGACGGCGCGCGCGCCGCCTGGAA GCTGTCGCTCGACGGCGTCGAGCTCGTTGCCGAACGCATCGCGCGCCACGGCATCGACTGCGACTTCACGCGCGGCTACC TGACGCTCGCCACCAAGCCGCGCCGGGTTCCCGAACTGCGTGCCTGGATGGACAGCGCGACGCGACACTGGGGCCATCCT TCGCTGAGCTGGCTCGACACCGATGCGATTCGCGCGCGCGTGGCCTCGCGCCTCTATCTGGCGGGCGTCCACGATCCGCT CTCGGGCCATCTGCATCCGCTGCGCTACTGCCTCGGGCTCGCCGCCGCGGCGCGTCGCGAGGGCGCGCTGCTGTTCGCGC ATTCCGCGGTGACGGAGGTCGTGCGCGGCACGCGTCCGCTGGTGCGCACGCGTGCGGGCCAGGTGCGCTGCCGCTTCGTG GTGTCGTGCGCGAACGCCGGCCCCGGCGGCTTCCTGCCCGCGCCGATCGAGGCGCGCATCGCCCCGGTGCCTTCCTACCT CATCGCCACCGAGCCGCTCGGCCAAGCGCGCGCCGACGCGCTGATCGCGCGGCGCGAGGCGGCTTGCGACAACAACGTGT TCCTCGACTATTTCCGACTGTCGGCCGACCACCGGATGCTGTTCGGCGGCCGCGCGAGCTCGGCGGGCGCGGCGCCGGCC GAACTCTCGGAGGCGATCCGCCGGCGCATGATCGAGGTGTTCCCGCAGCTTGCCGACGCGCACATCGACTACGCCTGGGG CGGATTCGTCGACATCACGCGCAATCGCGCCCCCGACTTCGGCGCGCTCGATCCGAACTACTTCTACCTGCAGGGCTACA GCGGCCACGGCGTGGCGCTGGCCGGCATCGCCGGGCGCGCGGTGGCGCGCGCGATCGCGGGTGAACGCGCGATGCTCGAG CCGTTCACGCGACTGCGGCACCGGCGCTTTCCGGGCGGCCCCGCCTGGCGGCAGGCAGCGCTCGAACTCGGAATGCGCTA CCACCAGTTGCTCAAGCGCTTCTGA
Upstream 100 bases:
>100_bases GCCCTTCGCGATCCGTGCGACTTGCGTGGAATCCGGCGCAGCACCGGGGCCGGGCGGCGCGATTGCGCGGCGCCGCGCTC CCATGAGAGCATCCCCGCTC
Downstream 100 bases:
>100_bases GCGCCGCCCGCCGCGCGGGCATGCCGCCGTCGGCGCGCCGGACCGTCAGTGCGCCCCGCCCGCGTCGACCGGCGCGGCCG AGCGGTGCGGCTTGGTAATC
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MTPTFLQHADALARHSYYEATAARPTADDPVLDGPLEADVCVIGAGFSGLSVALDCRAAGLSVVVLEAWRPGWGASGRNG GQVIGGFAKDAEIARQLGEDGARAAWKLSLDGVELVAERIARHGIDCDFTRGYLTLATKPRRVPELRAWMDSATRHWGHP SLSWLDTDAIRARVASRLYLAGVHDPLSGHLHPLRYCLGLAAAARREGALLFAHSAVTEVVRGTRPLVRTRAGQVRCRFV VSCANAGPGGFLPAPIEARIAPVPSYLIATEPLGQARADALIARREAACDNNVFLDYFRLSADHRMLFGGRASSAGAAPA ELSEAIRRRMIEVFPQLADAHIDYAWGGFVDITRNRAPDFGALDPNYFYLQGYSGHGVALAGIAGRAVARAIAGERAMLE PFTRLRHRRFPGGPAWRQAALELGMRYHQLLKRF
Sequences:
>Translated_434_residues MTPTFLQHADALARHSYYEATAARPTADDPVLDGPLEADVCVIGAGFSGLSVALDCRAAGLSVVVLEAWRPGWGASGRNG GQVIGGFAKDAEIARQLGEDGARAAWKLSLDGVELVAERIARHGIDCDFTRGYLTLATKPRRVPELRAWMDSATRHWGHP SLSWLDTDAIRARVASRLYLAGVHDPLSGHLHPLRYCLGLAAAARREGALLFAHSAVTEVVRGTRPLVRTRAGQVRCRFV VSCANAGPGGFLPAPIEARIAPVPSYLIATEPLGQARADALIARREAACDNNVFLDYFRLSADHRMLFGGRASSAGAAPA ELSEAIRRRMIEVFPQLADAHIDYAWGGFVDITRNRAPDFGALDPNYFYLQGYSGHGVALAGIAGRAVARAIAGERAMLE PFTRLRHRRFPGGPAWRQAALELGMRYHQLLKRF >Mature_433_residues TPTFLQHADALARHSYYEATAARPTADDPVLDGPLEADVCVIGAGFSGLSVALDCRAAGLSVVVLEAWRPGWGASGRNGG QVIGGFAKDAEIARQLGEDGARAAWKLSLDGVELVAERIARHGIDCDFTRGYLTLATKPRRVPELRAWMDSATRHWGHPS LSWLDTDAIRARVASRLYLAGVHDPLSGHLHPLRYCLGLAAAARREGALLFAHSAVTEVVRGTRPLVRTRAGQVRCRFVV SCANAGPGGFLPAPIEARIAPVPSYLIATEPLGQARADALIARREAACDNNVFLDYFRLSADHRMLFGGRASSAGAAPAE LSEAIRRRMIEVFPQLADAHIDYAWGGFVDITRNRAPDFGALDPNYFYLQGYSGHGVALAGIAGRAVARAIAGERAMLEP FTRLRHRRFPGGPAWRQAALELGMRYHQLLKRF
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787559, Length=420, Percent_Identity=38.3333333333333, Blast_Score=288, Evalue=4e-79,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 47013; Mature: 46882
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTFLQHADALARHSYYEATAARPTADDPVLDGPLEADVCVIGAGFSGLSVALDCRAAG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCC LSVVVLEAWRPGWGASGRNGGQVIGGFAKDAEIARQLGEDGARAAWKLSLDGVELVAERI CEEEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH ARHGIDCDFTRGYLTLATKPRRVPELRAWMDSATRHWGHPSLSWLDTDAIRARVASRLYL HHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHE AGVHDPLSGHLHPLRYCLGLAAAARREGALLFAHSAVTEVVRGTRPLVRTRAGQVRCRFV EECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHCCCCEEEEEE VSCANAGPGGFLPAPIEARIAPVPSYLIATEPLGQARADALIARREAACDNNVFLDYFRL EEECCCCCCCCCCCCCCCEECCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE SADHRMLFGGRASSAGAAPAELSEAIRRRMIEVFPQLADAHIDYAWGGFVDITRNRAPDF CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCC GALDPNYFYLQGYSGHGVALAGIAGRAVARAIAGERAMLEPFTRLRHRRFPGGPAWRQAA CCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH LELGMRYHQLLKRF HHHHHHHHHHHHCC >Mature Secondary Structure TPTFLQHADALARHSYYEATAARPTADDPVLDGPLEADVCVIGAGFSGLSVALDCRAAG CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCC LSVVVLEAWRPGWGASGRNGGQVIGGFAKDAEIARQLGEDGARAAWKLSLDGVELVAERI CEEEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH ARHGIDCDFTRGYLTLATKPRRVPELRAWMDSATRHWGHPSLSWLDTDAIRARVASRLYL HHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHE AGVHDPLSGHLHPLRYCLGLAAAARREGALLFAHSAVTEVVRGTRPLVRTRAGQVRCRFV EECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHCCCCEEEEEE VSCANAGPGGFLPAPIEARIAPVPSYLIATEPLGQARADALIARREAACDNNVFLDYFRL EEECCCCCCCCCCCCCCCEECCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE SADHRMLFGGRASSAGAAPAELSEAIRRRMIEVFPQLADAHIDYAWGGFVDITRNRAPDF CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCC GALDPNYFYLQGYSGHGVALAGIAGRAVARAIAGERAMLEPFTRLRHRRFPGGPAWRQAA CCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH LELGMRYHQLLKRF HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]