Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is dan [H]

Identifier: 238028626

GI number: 238028626

Start: 3513470

End: 3514945

Strand: Reverse

Name: dan [H]

Synonym: bglu_1g30900

Alternate gene names: 238028626

Gene position: 3514945-3513470 (Counterclockwise)

Preceding gene: 238028627

Following gene: 238028625

Centisome position: 89.98

GC content: 73.24

Gene sequence:

>1476_bases
ATGCATTCCCATCCCGAAGCCGCCGATACGCTGATCGTCGACGCGCAGCTCTACGACGGCACCGGCGCGCCGCCCGTGCC
GCGCGACGTCGCGATCCGCGACGGGCGCGTCGCCGCCGTCGGCAACCTGTCGAACTGGCTCGCCGAGGACGTGATCGAGG
CGAACGGCCGCGCGCTCGCGCCCGGCTTCATCGACGTCCACACCCACGACGACACGCACGTGATCCGCGCGCCGCAGATG
CTGCCTAAGATCTCGCAGGGCGTGACCACGGTGGTGGTCGGCAACTGCGGGATTAGCGCCGCGCCGGTCGCGCTGCGCGG
CGATCCGCCCGACCCGATGAACCTGCTCGGCGAGCGCGACGCGTTCCGCTACCCGAGCTTCGCGTCGTATGTCGCGGCCG
TCGACGCGGCCCGGCCGGCCGTCAACGTCGCGGCGCTGGTGGGCCACACCGCGCTGCGCAACAATCAGATGGACCGGCTC
GAGCGCGCGGCCAGCGCCGACGAGATCGCCGCGATGCGCGCGCAGCTCGAGGAGGCGCTCGCGCACGGCGCGCTCGGCCT
GAGCTCGGGGCTCGCCTACGGCTCGGCCTTCGCGGCGCCGGTGGAGGAGGTGATGGCGCTGGCCGAGCCGCTCGCGCGTG
CCGGCGCGCTCTACACCACCCACATGCGCACCGAGTTCGACGCGATCCTCGACGCGATGGAGGAGGCCTGCCGCGTGGGG
CGCCACGCGCGCGTGCCGGTGGTGATCTCGCACCTGAAATGCGCGGGGCCGGCGAACTGGGGGCGCAGCGCCGAGGTGCT
GGCCTCGCTCGACCGAGCGCGCGCGCTGCAGCCGGTGGGCTGCGACTGCTATCCGTACAGCCGCAGCTCGTCGACGCTCG
ACCTGAAGCAGGTAACGGGCGACATCGTGATCACCCTCACCTGGTCCGAGCCGCATCCGGAAATGGCCGGCAAGACCCTC
GCCGCGATCGCCGCCGCATGGGGCGTGAGCGAGCAGGACGCGGCGCGCCGGCTGCAGCCGGCCGGCGCCGTTTATCACAA
CATGTCCGAGGACGACGTGCGCCGGATCCTCTCGCATCCGGCCACCATGATCGGCTCGGACGGGCTGCCGAACGATCCGC
TGCCGCATCCGCGGCTCTGGGGCGCGTTCCCGCGCGTGCTCGGCCATTACGCGCGCGACCAGCAGCTGCTGCCGCTCGCC
GAGGCGGTGCGCAAGATGAGTTCGCTGACGGCGCGCCGCTTCGGGCTCGGACAGCGCGGCGAGGTGCACGTCGGCTACCA
CGCCGACCTGGTGCTGTTCGATCCCGACACGGTGATCGACGCCGCGTCGTTCGAGCGTCCGCAGCAGCCGGCGCGCGGCA
TCGAGGCGGTGTGGGTGAACGGCGTGCTGTCGTATCGCGACGGCGCGCCGACCGGCGCGCGCGCGGGCCGCTTCGTGCCG
CGCGGCGCGCGCGCGGTGCCGGACGACGCGTTCTGA

Upstream 100 bases:

>100_bases
CTGCGGCTCGGTGACGGATGCCGCGAGACGCTGCGCCGCATGAAGCACGCGCTCGACCTGCACCGCGGCGGCGGCGACCG
ACAACCCCTCGGAGACTGAC

Downstream 100 bases:

>100_bases
GGACGTGATGCCGGGTTCGCGCGCCGCGGCGGGCGCGAACTCGGCCCGAACCATGGCCGGCGCGCGGCTGCGGCGCCGGG
TAAGGCGGCCGTGCCGTGCC

Product: N-acyl-D-amino-acid deacylase

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM
LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL
ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG
RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL
AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA
EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP
RGARAVPDDAF

Sequences:

>Translated_491_residues
MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM
LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL
ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG
RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL
AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA
EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP
RGARAVPDDAF
>Mature_491_residues
MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM
LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL
ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG
RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL
AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA
EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP
RGARAVPDDAF

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 52354; Mature: 52354

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALA
CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHCCCCEEC
PGFIDVHTHDDTHVIRAPQMLPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERD
CCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCC
AFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRLERAASADEIAAMRAQLEEAL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH
AHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG
HHCCHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCC
RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTG
CCCCCCHHEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCC
DIVITLTWSEPHPEMAGKTLAAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP
CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC
ATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLAEAVRKMSSLTARRFGLGQRG
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
EVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP
CEEEEEEEEEEEECCCHHHCCHHCCCCCCHHCCCEEEEECCEEEECCCCCCCCCCCCCCC
RGARAVPDDAF
CCCCCCCCCCC
>Mature Secondary Structure
MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALA
CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHCCCCEEC
PGFIDVHTHDDTHVIRAPQMLPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERD
CCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCC
AFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRLERAASADEIAAMRAQLEEAL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH
AHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG
HHCCHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCC
RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTG
CCCCCCHHEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCC
DIVITLTWSEPHPEMAGKTLAAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP
CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC
ATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLAEAVRKMSSLTARRFGLGQRG
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
EVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP
CEEEEEEEEEEEECCCHHHCCHHCCCCCCHHCCCEEEEECCEEEECCCCCCCCCCCCCCC
RGARAVPDDAF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]