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The map label for this gene is yjgF [C]

Identifier: 238028625

GI number: 238028625

Start: 3512947

End: 3513333

Strand: Reverse

Name: yjgF [C]

Synonym: bglu_1g30890

Alternate gene names: 238028625

Gene position: 3513333-3512947 (Counterclockwise)

Preceding gene: 238028626

Following gene: 238028622

Centisome position: 89.94

GC content: 65.12

Gene sequence:

>387_bases
ATGAAGCGTTACGGTGTGGGCGATGCGAAGGGAACGGGCGGCCAGGTGATGCCGTTCGCGCGGGCGGTGGAAGCCGACGG
CTGGCTGTACGTGTCGGGACAGACGCCGATGCTGAACGGCGAGGTGGTCGAGGGCGGCATCGTCACGCAGTCGAAGCAGG
CGATCGAGAACCTGCTCGCGATCCTGAAGGATGCCGGCTACGGCGTCGAGCACGTCGTGCGCTGCGGCGTCTGGCTCGAC
GACGCGCGCGATTTCGCCTCGTTCAACAAGGTGTTCGTGTCGTATTTCGGCGAGCATCCGCCGGCGCGTGCCTGCGTGCA
GTCGAGCATGGTGATCGACTGCAAGGTCGAGGTGGATTGCATCGCCTACAAGCCGCCCGTCAAGTAG

Upstream 100 bases:

>100_bases
GAACTCGGCCCGAACCATGGCCGGCGCGCGGCTGCGGCGCCGGGTAAGGCGGCCGTGCCGTGCCGGCGCGGCCCGAACCA
GCAAACCGAAGGAGAAGACG

Downstream 100 bases:

>100_bases
GCGGCGCGGCGGGCCCTTGCCGATCACCAATGCGGCAAGGCGGGCACCGGCGCCCGGCTTGCCGCGTTGGTCGTTTCGAG
CGCGCCCCGCCGCCGCGTTT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKRYGVGDAKGTGGQVMPFARAVEADGWLYVSGQTPMLNGEVVEGGIVTQSKQAIENLLAILKDAGYGVEHVVRCGVWLD
DARDFASFNKVFVSYFGEHPPARACVQSSMVIDCKVEVDCIAYKPPVK

Sequences:

>Translated_128_residues
MKRYGVGDAKGTGGQVMPFARAVEADGWLYVSGQTPMLNGEVVEGGIVTQSKQAIENLLAILKDAGYGVEHVVRCGVWLD
DARDFASFNKVFVSYFGEHPPARACVQSSMVIDCKVEVDCIAYKPPVK
>Mature_128_residues
MKRYGVGDAKGTGGQVMPFARAVEADGWLYVSGQTPMLNGEVVEGGIVTQSKQAIENLLAILKDAGYGVEHVVRCGVWLD
DARDFASFNKVFVSYFGEHPPARACVQSSMVIDCKVEVDCIAYKPPVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=117, Percent_Identity=35.042735042735, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=32.7433628318584, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082213, Length=117, Percent_Identity=31.6239316239316, Blast_Score=68, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=127, Percent_Identity=29.9212598425197, Blast_Score=80, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=3e-14,
Organism=Drosophila melanogaster, GI19921376, Length=110, Percent_Identity=40, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13857; Mature: 13857

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYGVGDAKGTGGQVMPFARAVEADGWLYVSGQTPMLNGEVVEGGIVTQSKQAIENLLA
CCCCCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCEEEECCEEECHHHHHHHHHH
ILKDAGYGVEHVVRCGVWLDDARDFASFNKVFVSYFGEHPPARACVQSSMVIDCKVEVDC
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEEEE
IAYKPPVK
EECCCCCC
>Mature Secondary Structure
MKRYGVGDAKGTGGQVMPFARAVEADGWLYVSGQTPMLNGEVVEGGIVTQSKQAIENLLA
CCCCCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCEEEECCEEECHHHHHHHHHH
ILKDAGYGVEHVVRCGVWLDDARDFASFNKVFVSYFGEHPPARACVQSSMVIDCKVEVDC
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEEEE
IAYKPPVK
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]