| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is dan [H]
Identifier: 238028626
GI number: 238028626
Start: 3513470
End: 3514945
Strand: Reverse
Name: dan [H]
Synonym: bglu_1g30900
Alternate gene names: 238028626
Gene position: 3514945-3513470 (Counterclockwise)
Preceding gene: 238028627
Following gene: 238028625
Centisome position: 89.98
GC content: 73.24
Gene sequence:
>1476_bases ATGCATTCCCATCCCGAAGCCGCCGATACGCTGATCGTCGACGCGCAGCTCTACGACGGCACCGGCGCGCCGCCCGTGCC GCGCGACGTCGCGATCCGCGACGGGCGCGTCGCCGCCGTCGGCAACCTGTCGAACTGGCTCGCCGAGGACGTGATCGAGG CGAACGGCCGCGCGCTCGCGCCCGGCTTCATCGACGTCCACACCCACGACGACACGCACGTGATCCGCGCGCCGCAGATG CTGCCTAAGATCTCGCAGGGCGTGACCACGGTGGTGGTCGGCAACTGCGGGATTAGCGCCGCGCCGGTCGCGCTGCGCGG CGATCCGCCCGACCCGATGAACCTGCTCGGCGAGCGCGACGCGTTCCGCTACCCGAGCTTCGCGTCGTATGTCGCGGCCG TCGACGCGGCCCGGCCGGCCGTCAACGTCGCGGCGCTGGTGGGCCACACCGCGCTGCGCAACAATCAGATGGACCGGCTC GAGCGCGCGGCCAGCGCCGACGAGATCGCCGCGATGCGCGCGCAGCTCGAGGAGGCGCTCGCGCACGGCGCGCTCGGCCT GAGCTCGGGGCTCGCCTACGGCTCGGCCTTCGCGGCGCCGGTGGAGGAGGTGATGGCGCTGGCCGAGCCGCTCGCGCGTG CCGGCGCGCTCTACACCACCCACATGCGCACCGAGTTCGACGCGATCCTCGACGCGATGGAGGAGGCCTGCCGCGTGGGG CGCCACGCGCGCGTGCCGGTGGTGATCTCGCACCTGAAATGCGCGGGGCCGGCGAACTGGGGGCGCAGCGCCGAGGTGCT GGCCTCGCTCGACCGAGCGCGCGCGCTGCAGCCGGTGGGCTGCGACTGCTATCCGTACAGCCGCAGCTCGTCGACGCTCG ACCTGAAGCAGGTAACGGGCGACATCGTGATCACCCTCACCTGGTCCGAGCCGCATCCGGAAATGGCCGGCAAGACCCTC GCCGCGATCGCCGCCGCATGGGGCGTGAGCGAGCAGGACGCGGCGCGCCGGCTGCAGCCGGCCGGCGCCGTTTATCACAA CATGTCCGAGGACGACGTGCGCCGGATCCTCTCGCATCCGGCCACCATGATCGGCTCGGACGGGCTGCCGAACGATCCGC TGCCGCATCCGCGGCTCTGGGGCGCGTTCCCGCGCGTGCTCGGCCATTACGCGCGCGACCAGCAGCTGCTGCCGCTCGCC GAGGCGGTGCGCAAGATGAGTTCGCTGACGGCGCGCCGCTTCGGGCTCGGACAGCGCGGCGAGGTGCACGTCGGCTACCA CGCCGACCTGGTGCTGTTCGATCCCGACACGGTGATCGACGCCGCGTCGTTCGAGCGTCCGCAGCAGCCGGCGCGCGGCA TCGAGGCGGTGTGGGTGAACGGCGTGCTGTCGTATCGCGACGGCGCGCCGACCGGCGCGCGCGCGGGCCGCTTCGTGCCG CGCGGCGCGCGCGCGGTGCCGGACGACGCGTTCTGA
Upstream 100 bases:
>100_bases CTGCGGCTCGGTGACGGATGCCGCGAGACGCTGCGCCGCATGAAGCACGCGCTCGACCTGCACCGCGGCGGCGGCGACCG ACAACCCCTCGGAGACTGAC
Downstream 100 bases:
>100_bases GGACGTGATGCCGGGTTCGCGCGCCGCGGCGGGCGCGAACTCGGCCCGAACCATGGCCGGCGCGCGGCTGCGGCGCCGGG TAAGGCGGCCGTGCCGTGCC
Product: N-acyl-D-amino-acid deacylase
Products: NA
Alternate protein names: N-acyl-D-amino-acid deacylase [H]
Number of amino acids: Translated: 491; Mature: 491
Protein sequence:
>491_residues MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP RGARAVPDDAF
Sequences:
>Translated_491_residues MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP RGARAVPDDAF >Mature_491_residues MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALAPGFIDVHTHDDTHVIRAPQM LPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERDAFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRL ERAASADEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTGDIVITLTWSEPHPEMAGKTL AAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLA EAVRKMSSLTARRFGLGQRGEVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP RGARAVPDDAF
Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR023100 - InterPro: IPR012855 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]
EC number: =3.5.1.81 [H]
Molecular weight: Translated: 52354; Mature: 52354
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALA CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHCCCCEEC PGFIDVHTHDDTHVIRAPQMLPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERD CCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCC AFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRLERAASADEIAAMRAQLEEAL CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH AHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG HHCCHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCC RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTG CCCCCCHHEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCC DIVITLTWSEPHPEMAGKTLAAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC ATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLAEAVRKMSSLTARRFGLGQRG HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC EVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP CEEEEEEEEEEEECCCHHHCCHHCCCCCCHHCCCEEEEECCEEEECCCCCCCCCCCCCCC RGARAVPDDAF CCCCCCCCCCC >Mature Secondary Structure MHSHPEAADTLIVDAQLYDGTGAPPVPRDVAIRDGRVAAVGNLSNWLAEDVIEANGRALA CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHCCCCEEC PGFIDVHTHDDTHVIRAPQMLPKISQGVTTVVVGNCGISAAPVALRGDPPDPMNLLGERD CCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCC AFRYPSFASYVAAVDAARPAVNVAALVGHTALRNNQMDRLERAASADEIAAMRAQLEEAL CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH AHGALGLSSGLAYGSAFAAPVEEVMALAEPLARAGALYTTHMRTEFDAILDAMEEACRVG HHCCHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCC RHARVPVVISHLKCAGPANWGRSAEVLASLDRARALQPVGCDCYPYSRSSSTLDLKQVTG CCCCCCHHEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCC DIVITLTWSEPHPEMAGKTLAAIAAAWGVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC ATMIGSDGLPNDPLPHPRLWGAFPRVLGHYARDQQLLPLAEAVRKMSSLTARRFGLGQRG HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC EVHVGYHADLVLFDPDTVIDAASFERPQQPARGIEAVWVNGVLSYRDGAPTGARAGRFVP CEEEEEEEEEEEECCCHHHCCHHCCCCCCHHCCCEEEEECCEEEECCCCCCCCCCCCCCC RGARAVPDDAF CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8541651 [H]