| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028538
Identifier: 238028538
GI number: 238028538
Start: 3400645
End: 3403377
Strand: Direct
Name: 238028538
Synonym: bglu_1g30020
Alternate gene names: NA
Gene position: 3400645-3403377 (Clockwise)
Preceding gene: 238028536
Following gene: 238028539
Centisome position: 87.05
GC content: 69.01
Gene sequence:
>2733_bases GTGACGCGTGCGCAGTGTCTCGGCCGGTGGTGGCTGCTCGTTTGCGCGATCAATGCACCCGCTCAGGCGCTCGCCGAACC GGCCCCCGCGCACGGCGCAGTGCCGCCGGCGGTGCAGCCGTTCGCGGCCACCGCCAGCCGCCCGAATCTGGCATTCTTCT TCGGCGCGAATCCGCCCGTCGACGCATTGCAGGCCTTCGACGCGGTGGTCGTCGATGCCTCGCGCGGTTTCGATCCGCAG GCCCATCCGCTCGCGCACACGCTGTGGATGGCGCGCACCACGGCCGAGGCCGGGCAAACTCCGGCGCAGTTCGTCGCCCA GGCCATCGAGCCGCTGTGGCAGCGCGGCTATCGCGGCTTTTTGCTCGACTCGCCGGAGGCGCTCGCCGCCGTCGCCGCGA TCCACGCGGCACACCCCGATGCACGGCTCATCGCCGGCGGCCCCGATGCGCTGCGGGCCGCCATGCCGCTCGCGCGCGAA CTCTACGCGGTGGTCGGCGAATCGCTGGTGCGCGGCCTGGACGCGCCCGGTACGCTCCCGCTCGATGTGCCGCCGGCGTT GCGCGACAGCCGCGCGGCGGCCGCCCGTGCGTTCACCGCGCAAACCGGGGTGCCGGTGGTGTCGATCGAATACTGCGCGC GCACCGATCGCAACTGCGCGCGCCAGACCGCCGAAACGGTGCTGCAGCTTGGCGTCGAGCCGTACGTGACGAACCCCGCG CGCGACGTCGTCGGGATCGGCGCAATCGAGGTGCTGCCGCGCAAGATTCTCGTGGTGCAGGATCACAACCCGAAGCAGCC GCTCGACGGCAGCATCGGCGTGCGCGATCTCGCCACGCCGCTGAATTATCTCGGCTACGACGTGCAATACGCGGATTTTG CGTCGGGCCTGCCCGACGACATCACGCCCGACCGATACGCGGGCGTGGTCGTGTGGCTGCAAGGCACGGGCGTGCCGAAC ACGCGCGCCTGGGAACGCTGGGTCGCCGCGCGCATCGTCGATCATGTGCCGGTGGCGTTCCTCGACCAGTTCGGCTTCGA TCCATCCGGCCCGCTTGCGGCCGGACTGGGCCTGCAAACGGTGCAGGGGCCGTTCTCGGGGCCGGTGAACGTGATCGCGC GCGATCCGATGATCGGTTTCGAAATCAATCCTCGCAACGATCCGCGCGACTTGCTCGGCGTGCGCGTCGGCGAGACGGGG CACGCGCTGCTGCGCCTGAGCGTGAACGGCGGCGAGCTGGACCCGGTGGCGATCCTGCCATGGGGCGGCTACGCGCTCGC GCCGTACACGGTGGTGTCGCTCGACGGCGTTCAGATGGAGCGCTGGGCGATCCAGCCGATGCGGTTCCTGACTGCGGCGC TGCGCTTGCCGGCGCTGCCGTCGCCGAGCGTGACCACCGAAAACGGCCGTCGGCTGCTCATGACGCACGTTGACGGTGAC GGCTTCGCGTCGCGCACCGAGTTTCCCGGCCCGGACTATTCGGGCGAAGCGCTCTACGAGCAGATCTTCTCGCACTACAA GATCCCGATGACGCTGTCGGTGATCGAGGGCGAGGTCGGCCCGGCGGGCTTGTATCCGAAGATTTCGCCGCGGCTCGAAG AGATCGCGCGCAAGATGTTCGCGCTGCCGTGGGTCGAGATCGGCACGCATACCTACTCGCACCCGTTCCAGTGGGAAGAC GTGGACGGCAGCACCGGCGCGAAGGTCGATCGCGGCGGCGGCGATGCAGCGTTCTCGCTGAACATTCCGGGCTACAAGTT CAACATCGACCGCGAGATTTCCGGCTCGATCGACTACATCAACGCGAAGCTCGCGCCGCCGGGCAAAAAGGTGGTGGTGC TGCAATGGTCGGGCGACTGTCAGCCGCCCGGCATCGTTGTGCGCAAGGTCTACGAGGCCGGCGTCTACAACTTCAACGGC GGCGATACGGTGATCACGCGCTCGCAGCCGACCTGGACGGCGATCGCGCCGATCGGCGTCGACAAGGGGCCGAACGCCTA TCAGGTCTACGCGCCCAACCAGGACGAAAATGTTTATACCAACGACTGGCAAGGCCCGTTCTACGGCTTCGACCGCGTGC TTGAAACCTTCGCCATGACCGAGAGCCCGCTGCGCTTCAAGCCGATCGACATCTACTACCACATGTACAGCGGCACCAAG CTGGCGTCGCTGCGTTCGCTCGACAAGATCTACTCGGCGGTGCTGAAGCAGCCGCTGCTGCCGGTGCACGTGACCGACTA CATCCGCAAGGTGCTCGACTGGCGCACGTTCGCGGTGGCGCGTCAGACCGGCACGCGCGACGGCTGGGTGGTGCGCGGCA ACGGCGCGGTGCGCGAGCTGCATTGGGCCGGCAGCGAGGTGCCCGACCTCACGCAGGCTTTCGGCGTGACCGGCTACGCG CCCGGCCCCGACGGCAACTACCTTCATATCGACGGCGGCGCCGCGCGCTTCACGCTCGCGCCCGCTTCCGGCGCCGCGCC GCAGCGCCCGTACATCGCGCAGGCCAACGGTTTCGTGCGCCGCTTCCGGGTGACGCCGCACGGCCTGGCATTCGAATTCG GCGGCTACTACCAGCCGTTCGTCGAGCTGGCGAACGCGCAGCGCTGCCGCGCGCGCGTGGCCGGCCAGCCGGTCGCGACG CGCGCCGACGGCGCGCTGCTACGGTTCGACACGACGGGCGTGGCCGGCGCGCGCGTCACCTATCAACCCGTCGAGATCGA TTGTGACCGCTAG
Upstream 100 bases:
>100_bases TGCGCGGTGCACTCCGAAGACCCGCATGCGAAACCAAACCAATCTGTCAGGCACTGCATCGCGCGCACCCCGGCGACAGT GGAACGCGCTACGCCGCATC
Downstream 100 bases:
>100_bases TCGTCCGCGCATCGCCCCGCCCTGGCTCGTGCTGCTGCTTGCGTTGGGGGTGGTCGTGATCCTCTATACGGCATGGCCGC GCGAAGCGCTGCGCGAGCGG
Product: putative polysaccharide transport system component signal peptide protein (ragA)
Products: NA
Alternate protein names: Polysaccharide Deacetylase; Polysaccharide Transport System Component Protein
Number of amino acids: Translated: 910; Mature: 909
Protein sequence:
>910_residues MTRAQCLGRWWLLVCAINAPAQALAEPAPAHGAVPPAVQPFAATASRPNLAFFFGANPPVDALQAFDAVVVDASRGFDPQ AHPLAHTLWMARTTAEAGQTPAQFVAQAIEPLWQRGYRGFLLDSPEALAAVAAIHAAHPDARLIAGGPDALRAAMPLARE LYAVVGESLVRGLDAPGTLPLDVPPALRDSRAAAARAFTAQTGVPVVSIEYCARTDRNCARQTAETVLQLGVEPYVTNPA RDVVGIGAIEVLPRKILVVQDHNPKQPLDGSIGVRDLATPLNYLGYDVQYADFASGLPDDITPDRYAGVVVWLQGTGVPN TRAWERWVAARIVDHVPVAFLDQFGFDPSGPLAAGLGLQTVQGPFSGPVNVIARDPMIGFEINPRNDPRDLLGVRVGETG HALLRLSVNGGELDPVAILPWGGYALAPYTVVSLDGVQMERWAIQPMRFLTAALRLPALPSPSVTTENGRRLLMTHVDGD GFASRTEFPGPDYSGEALYEQIFSHYKIPMTLSVIEGEVGPAGLYPKISPRLEEIARKMFALPWVEIGTHTYSHPFQWED VDGSTGAKVDRGGGDAAFSLNIPGYKFNIDREISGSIDYINAKLAPPGKKVVVLQWSGDCQPPGIVVRKVYEAGVYNFNG GDTVITRSQPTWTAIAPIGVDKGPNAYQVYAPNQDENVYTNDWQGPFYGFDRVLETFAMTESPLRFKPIDIYYHMYSGTK LASLRSLDKIYSAVLKQPLLPVHVTDYIRKVLDWRTFAVARQTGTRDGWVVRGNGAVRELHWAGSEVPDLTQAFGVTGYA PGPDGNYLHIDGGAARFTLAPASGAAPQRPYIAQANGFVRRFRVTPHGLAFEFGGYYQPFVELANAQRCRARVAGQPVAT RADGALLRFDTTGVAGARVTYQPVEIDCDR
Sequences:
>Translated_910_residues MTRAQCLGRWWLLVCAINAPAQALAEPAPAHGAVPPAVQPFAATASRPNLAFFFGANPPVDALQAFDAVVVDASRGFDPQ AHPLAHTLWMARTTAEAGQTPAQFVAQAIEPLWQRGYRGFLLDSPEALAAVAAIHAAHPDARLIAGGPDALRAAMPLARE LYAVVGESLVRGLDAPGTLPLDVPPALRDSRAAAARAFTAQTGVPVVSIEYCARTDRNCARQTAETVLQLGVEPYVTNPA RDVVGIGAIEVLPRKILVVQDHNPKQPLDGSIGVRDLATPLNYLGYDVQYADFASGLPDDITPDRYAGVVVWLQGTGVPN TRAWERWVAARIVDHVPVAFLDQFGFDPSGPLAAGLGLQTVQGPFSGPVNVIARDPMIGFEINPRNDPRDLLGVRVGETG HALLRLSVNGGELDPVAILPWGGYALAPYTVVSLDGVQMERWAIQPMRFLTAALRLPALPSPSVTTENGRRLLMTHVDGD GFASRTEFPGPDYSGEALYEQIFSHYKIPMTLSVIEGEVGPAGLYPKISPRLEEIARKMFALPWVEIGTHTYSHPFQWED VDGSTGAKVDRGGGDAAFSLNIPGYKFNIDREISGSIDYINAKLAPPGKKVVVLQWSGDCQPPGIVVRKVYEAGVYNFNG GDTVITRSQPTWTAIAPIGVDKGPNAYQVYAPNQDENVYTNDWQGPFYGFDRVLETFAMTESPLRFKPIDIYYHMYSGTK LASLRSLDKIYSAVLKQPLLPVHVTDYIRKVLDWRTFAVARQTGTRDGWVVRGNGAVRELHWAGSEVPDLTQAFGVTGYA PGPDGNYLHIDGGAARFTLAPASGAAPQRPYIAQANGFVRRFRVTPHGLAFEFGGYYQPFVELANAQRCRARVAGQPVAT RADGALLRFDTTGVAGARVTYQPVEIDCDR >Mature_909_residues TRAQCLGRWWLLVCAINAPAQALAEPAPAHGAVPPAVQPFAATASRPNLAFFFGANPPVDALQAFDAVVVDASRGFDPQA HPLAHTLWMARTTAEAGQTPAQFVAQAIEPLWQRGYRGFLLDSPEALAAVAAIHAAHPDARLIAGGPDALRAAMPLAREL YAVVGESLVRGLDAPGTLPLDVPPALRDSRAAAARAFTAQTGVPVVSIEYCARTDRNCARQTAETVLQLGVEPYVTNPAR DVVGIGAIEVLPRKILVVQDHNPKQPLDGSIGVRDLATPLNYLGYDVQYADFASGLPDDITPDRYAGVVVWLQGTGVPNT RAWERWVAARIVDHVPVAFLDQFGFDPSGPLAAGLGLQTVQGPFSGPVNVIARDPMIGFEINPRNDPRDLLGVRVGETGH ALLRLSVNGGELDPVAILPWGGYALAPYTVVSLDGVQMERWAIQPMRFLTAALRLPALPSPSVTTENGRRLLMTHVDGDG FASRTEFPGPDYSGEALYEQIFSHYKIPMTLSVIEGEVGPAGLYPKISPRLEEIARKMFALPWVEIGTHTYSHPFQWEDV DGSTGAKVDRGGGDAAFSLNIPGYKFNIDREISGSIDYINAKLAPPGKKVVVLQWSGDCQPPGIVVRKVYEAGVYNFNGG DTVITRSQPTWTAIAPIGVDKGPNAYQVYAPNQDENVYTNDWQGPFYGFDRVLETFAMTESPLRFKPIDIYYHMYSGTKL ASLRSLDKIYSAVLKQPLLPVHVTDYIRKVLDWRTFAVARQTGTRDGWVVRGNGAVRELHWAGSEVPDLTQAFGVTGYAP GPDGNYLHIDGGAARFTLAPASGAAPQRPYIAQANGFVRRFRVTPHGLAFEFGGYYQPFVELANAQRCRARVAGQPVATR ADGALLRFDTTGVAGARVTYQPVEIDCDR
Specific function: Unknown
COG id: COG3868
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98465; Mature: 98333
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRAQCLGRWWLLVCAINAPAQALAEPAPAHGAVPPAVQPFAATASRPNLAFFFGANPPV CCHHHHHHHEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCH DALQAFDAVVVDASRGFDPQAHPLAHTLWMARTTAEAGQTPAQFVAQAIEPLWQRGYRGF HHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE LLDSPEALAAVAAIHAAHPDARLIAGGPDALRAAMPLARELYAVVGESLVRGLDAPGTLP EECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LDVPPALRDSRAAAARAFTAQTGVPVVSIEYCARTDRNCARQTAETVLQLGVEPYVTNPA CCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCH RDVVGIGAIEVLPRKILVVQDHNPKQPLDGSIGVRDLATPLNYLGYDVQYADFASGLPDD HHHHCCCHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCCC ITPDRYAGVVVWLQGTGVPNTRAWERWVAARIVDHVPVAFLDQFGFDPSGPLAAGLGLQT CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCCC VQGPFSGPVNVIARDPMIGFEINPRNDPRDLLGVRVGETGHALLRLSVNGGELDPVAILP CCCCCCCCCEEEECCCEEEEEECCCCCCHHHHEEEECCCCCEEEEEEECCCCCCCEEEEE WGGYALAPYTVVSLDGVQMERWAIQPMRFLTAALRLPALPSPSVTTENGRRLLMTHVDGD CCCEEECCEEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC GFASRTEFPGPDYSGEALYEQIFSHYKIPMTLSVIEGEVGPAGLYPKISPRLEEIARKMF CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH ALPWVEIGTHTYSHPFQWEDVDGSTGAKVDRGGGDAAFSLNIPGYKFNIDREISGSIDYI HCCCEEECCCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCEEEE NAKLAPPGKKVVVLQWSGDCQPPGIVVRKVYEAGVYNFNGGDTVITRSQPTWTAIAPIGV EEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEEECCCCEEEECCCCCEEEEEEECC DKGPNAYQVYAPNQDENVYTNDWQGPFYGFDRVLETFAMTESPLRFKPIDIYYHMYSGTK CCCCCEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCH LASLRSLDKIYSAVLKQPLLPVHVTDYIRKVLDWRTFAVARQTGTRDGWVVRGNGAVREL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCEEEE HWAGSEVPDLTQAFGVTGYAPGPDGNYLHIDGGAARFTLAPASGAAPQRPYIAQANGFVR ECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE RFRVTPHGLAFEFGGYYQPFVELANAQRCRARVAGQPVATRADGALLRFDTTGVAGARVT EEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEE YQPVEIDCDR EEEEEEECCC >Mature Secondary Structure TRAQCLGRWWLLVCAINAPAQALAEPAPAHGAVPPAVQPFAATASRPNLAFFFGANPPV CHHHHHHHEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCH DALQAFDAVVVDASRGFDPQAHPLAHTLWMARTTAEAGQTPAQFVAQAIEPLWQRGYRGF HHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE LLDSPEALAAVAAIHAAHPDARLIAGGPDALRAAMPLARELYAVVGESLVRGLDAPGTLP EECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LDVPPALRDSRAAAARAFTAQTGVPVVSIEYCARTDRNCARQTAETVLQLGVEPYVTNPA CCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCH RDVVGIGAIEVLPRKILVVQDHNPKQPLDGSIGVRDLATPLNYLGYDVQYADFASGLPDD HHHHCCCHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCCC ITPDRYAGVVVWLQGTGVPNTRAWERWVAARIVDHVPVAFLDQFGFDPSGPLAAGLGLQT CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCCC VQGPFSGPVNVIARDPMIGFEINPRNDPRDLLGVRVGETGHALLRLSVNGGELDPVAILP CCCCCCCCCEEEECCCEEEEEECCCCCCHHHHEEEECCCCCEEEEEEECCCCCCCEEEEE WGGYALAPYTVVSLDGVQMERWAIQPMRFLTAALRLPALPSPSVTTENGRRLLMTHVDGD CCCEEECCEEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC GFASRTEFPGPDYSGEALYEQIFSHYKIPMTLSVIEGEVGPAGLYPKISPRLEEIARKMF CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH ALPWVEIGTHTYSHPFQWEDVDGSTGAKVDRGGGDAAFSLNIPGYKFNIDREISGSIDYI HCCCEEECCCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCEEEE NAKLAPPGKKVVVLQWSGDCQPPGIVVRKVYEAGVYNFNGGDTVITRSQPTWTAIAPIGV EEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEEECCCCEEEECCCCCEEEEEEECC DKGPNAYQVYAPNQDENVYTNDWQGPFYGFDRVLETFAMTESPLRFKPIDIYYHMYSGTK CCCCCEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCH LASLRSLDKIYSAVLKQPLLPVHVTDYIRKVLDWRTFAVARQTGTRDGWVVRGNGAVREL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCEEEE HWAGSEVPDLTQAFGVTGYAPGPDGNYLHIDGGAARFTLAPASGAAPQRPYIAQANGFVR ECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE RFRVTPHGLAFEFGGYYQPFVELANAQRCRARVAGQPVATRADGALLRFDTTGVAGARVT EEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEE YQPVEIDCDR EEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA