Click here to switch to the map view.

The map label for this gene is rfaF [H]

Identifier: 238028518

GI number: 238028518

Start: 3376257

End: 3377297

Strand: Direct

Name: rfaF [H]

Synonym: bglu_1g29820

Alternate gene names: 238028518

Gene position: 3376257-3377297 (Clockwise)

Preceding gene: 238028517

Following gene: 238028519

Centisome position: 86.43

GC content: 69.45

Gene sequence:

>1041_bases
ATGCGTCGCGCGTTGGTAATCGCACCGAATTGGATCGGTGACGCATTGATGGCGCAGCCGCTTTTCGCGCTGCTCAAGAA
ACTGCATCCGCGCCTCAAAATCGACGCGCTGGCGCCCGGCTGGGTCGCGCCGGTGCTCGAACGGATGCCCGAGATCCAGG
AGGTGCACGCCACCGACCTGGCCCACGGCAAGCTGCAGATGCTGCGCCGCTGGCAACTCGCGAGCGACCTGCGCGAGGTG
GGCTACGACGCCGCCTACGTGCTGCCGAACTCGCTGAAGTCGGCGCTGATCCCGTGGCTCGCCGGCATCCCGCTGCGCAT
CGGCTACACCGGCGAGTCGCGCTACGCGCTGCTCAACGTGCGCCATGCCAATCCGCCGAAGGCGCGCGACGCGCGCCCGC
CGATGGTGCCGTTCTATGCCGCGCTCGCCTACAAGCCCGGCGTGCGGCTCGACGAGACGCTCCAGGCGCTGCCGATGCCG
CGGCTCGATTCGGATCTCAACGAGGCCGCGCGCGTCTCGGCGCGCTTTCACCTCGATACGCGCAAGCCGCTGATCGTGTT
CTGCCCCGGCGCCGAATACGGCCCCGCCAAGCGCTGGCCGCCCGAGCATTTCGCGGCGCTCGCGCGGATCGTCGGCCAAT
CGTTCCCTTACACGCAGATCATCGCGCTCGGCTCGCCGAAGGACGCCCCGGCCGCCCAGGCGATCGCCGACCAGGCGCCG
GGCGTGCGCAACCTGTGCGGCCAGACCTCGCTCACCGAGGCCTGCGCGCTGATCGCGCGCGCCAACGCGGTGGTCACCAA
CGATTCCGGGCTGATGCACGTGGCCGCCGCGCTGCGCCGGCCGCTCGTCGCGCTGTACGGCTCGACGGATCCGCGCCACA
CCCCGCCGCTGTCCGATCTGGCAAAGGTACAATGGCTGCATCTCGAATGCAGTCCCTGTTTCCAGCGAGAATGCCCGCTC
GGCCATCTGAACTGCCTGCGCGAGCTGAGTCCGGAGCAGGTATTCGCCGATCTGCGCGGGATGCTCGTGGCGCAGCGCTG
A

Upstream 100 bases:

>100_bases
CCCGGCGCGCCGCCCGGGCCGCCCCTCGTCTCACTCGTCCCGCCCACCCGAGCGCGGCGCCACGGCGCCGCGTTTCATCA
CGACACCGGATATCGACCTG

Downstream 100 bases:

>100_bases
CGGCCCCGGTATCCGACCTCGACGCATGACTGACGCTGGCGGCCTCGCGGCCGCTGCCCCGTAACAGCGCGCAAGCGCAA
GAGACAAACCCGATGCCACG

Product: putative ADP-heptose--LPS heptosyltransferase II

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRRALVIAPNWIGDALMAQPLFALLKKLHPRLKIDALAPGWVAPVLERMPEIQEVHATDLAHGKLQMLRRWQLASDLREV
GYDAAYVLPNSLKSALIPWLAGIPLRIGYTGESRYALLNVRHANPPKARDARPPMVPFYAALAYKPGVRLDETLQALPMP
RLDSDLNEAARVSARFHLDTRKPLIVFCPGAEYGPAKRWPPEHFAALARIVGQSFPYTQIIALGSPKDAPAAQAIADQAP
GVRNLCGQTSLTEACALIARANAVVTNDSGLMHVAAALRRPLVALYGSTDPRHTPPLSDLAKVQWLHLECSPCFQRECPL
GHLNCLRELSPEQVFADLRGMLVAQR

Sequences:

>Translated_346_residues
MRRALVIAPNWIGDALMAQPLFALLKKLHPRLKIDALAPGWVAPVLERMPEIQEVHATDLAHGKLQMLRRWQLASDLREV
GYDAAYVLPNSLKSALIPWLAGIPLRIGYTGESRYALLNVRHANPPKARDARPPMVPFYAALAYKPGVRLDETLQALPMP
RLDSDLNEAARVSARFHLDTRKPLIVFCPGAEYGPAKRWPPEHFAALARIVGQSFPYTQIIALGSPKDAPAAQAIADQAP
GVRNLCGQTSLTEACALIARANAVVTNDSGLMHVAAALRRPLVALYGSTDPRHTPPLSDLAKVQWLHLECSPCFQRECPL
GHLNCLRELSPEQVFADLRGMLVAQR
>Mature_346_residues
MRRALVIAPNWIGDALMAQPLFALLKKLHPRLKIDALAPGWVAPVLERMPEIQEVHATDLAHGKLQMLRRWQLASDLREV
GYDAAYVLPNSLKSALIPWLAGIPLRIGYTGESRYALLNVRHANPPKARDARPPMVPFYAALAYKPGVRLDETLQALPMP
RLDSDLNEAARVSARFHLDTRKPLIVFCPGAEYGPAKRWPPEHFAALARIVGQSFPYTQIIALGSPKDAPAAQAIADQAP
GVRNLCGQTSLTEACALIARANAVVTNDSGLMHVAAALRRPLVALYGSTDPRHTPPLSDLAKVQWLHLECSPCFQRECPL
GHLNCLRELSPEQVFADLRGMLVAQR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=355, Percent_Identity=43.943661971831, Blast_Score=271, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38079; Mature: 38079

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRALVIAPNWIGDALMAQPLFALLKKLHPRLKIDALAPGWVAPVLERMPEIQEVHATDL
CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHH
AHGKLQMLRRWQLASDLREVGYDAAYVLPNSLKSALIPWLAGIPLRIGYTGESRYALLNV
HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEE
RHANPPKARDARPPMVPFYAALAYKPGVRLDETLQALPMPRLDSDLNEAARVSARFHLDT
ECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHEEEECC
RKPLIVFCPGAEYGPAKRWPPEHFAALARIVGQSFPYTQIIALGSPKDAPAAQAIADQAP
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCC
GVRNLCGQTSLTEACALIARANAVVTNDSGLMHVAAALRRPLVALYGSTDPRHTPPLSDL
CHHHHHCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHH
AKVQWLHLECSPCFQRECPLGHLNCLRELSPEQVFADLRGMLVAQR
HHEEEEEEECCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRALVIAPNWIGDALMAQPLFALLKKLHPRLKIDALAPGWVAPVLERMPEIQEVHATDL
CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHH
AHGKLQMLRRWQLASDLREVGYDAAYVLPNSLKSALIPWLAGIPLRIGYTGESRYALLNV
HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEE
RHANPPKARDARPPMVPFYAALAYKPGVRLDETLQALPMPRLDSDLNEAARVSARFHLDT
ECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHEEEECC
RKPLIVFCPGAEYGPAKRWPPEHFAALARIVGQSFPYTQIIALGSPKDAPAAQAIADQAP
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCC
GVRNLCGQTSLTEACALIARANAVVTNDSGLMHVAAALRRPLVALYGSTDPRHTPPLSDL
CHHHHHCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHH
AKVQWLHLECSPCFQRECPLGHLNCLRELSPEQVFADLRGMLVAQR
HHEEEEEEECCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 8478319 [H]