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The map label for this gene is ywlC [H]

Identifier: 238028508

GI number: 238028508

Start: 3366133

End: 3367212

Strand: Reverse

Name: ywlC [H]

Synonym: bglu_1g29720

Alternate gene names: 238028508

Gene position: 3367212-3366133 (Counterclockwise)

Preceding gene: 238028509

Following gene: 238028504

Centisome position: 86.19

GC content: 77.69

Gene sequence:

>1080_bases
ATGACTTCCGACGCCCGCCCGACGCCCGCCGGCAGCGCGCCCGACGCATCCGGCCCGCACGGCGTGCCGGCCGCGCGGAT
CGACGAGGCCGCGGCGCGGCTCGCCGCCGGCGAGCTCGTCGCGTTTCCGACCGAAACCGTCTACGGCCTCGGCGGCGACG
CCGAGTCGCCGCAGGCGGTCGCGCGCATCTACGCGGCCAAGGGCCGGCCGGCGAATCATCCGGTGATCGTGCACCTGCCG
CCGGGCGGCGATCCGGGCTACTGGGTGCCGGCGCTGCCCGCCGACGCACGCCGGCTGATCGAGGCGTTCTGGCCCGGGCC
GCTCACCTTGATCCTGAAGCGCGCCGCGCACATCCCCGACGCGGTCAGCGGCGGGCAGGACTCGGTGGGGCTGCGCTGCC
CCTCGCATCCGGTCGCGCAGGCGCTGCTCGCGGCCTTCAGCGCGCGGCGCGCCGGCCACGGCGGCGTCGCCGCGCCGTCC
GCGAACCGCTTCGGCCACGTCAGTCCGACCACCGCGCAGCACGTGCGCGACGAGTTCGGCGACGCGGTCCACGTGCTCGA
CGGCGGCGCCGCCGAGGTCGGCATCGAATCGACGATCCTCGATCTGTCGCGCGGCTTCCCGGCGCTGCTGCGGCCCGGCC
ACGTCACGCCGCAGCAGATCGCCGAGGTGCTCGGCACCCTGCCGCGCCTGCCGGACGGCGGCGACCCCGGCGCGCCGCGC
GCCTCCGGCACGCTGAAGGCGCACTACGCGCCGCGCACGCCGCTCGTGCTGCTGCCGTTCGGGCGGCTCGCGCCGCTGCT
CGAGGCGGCCGCGGCGGCCGGCGAGCCGGTCGCGCTGGTGGCGCGCGCCTCCAGCGCCGGCGCCTGGGCCGCGGCGCCCG
GCGTGCATTTCGTGGCCGCGCCCGAGGATCCGCAGGCCTATGCGCGCGAACTCTACGGCCTGCTGCGTGCGCTCGATCGC
GCGAGCGTGACGCGGATTCTGGTCGAGCAACTGCCCGGCACGCCCGAGTGGGCCGCCGTCAACGACCGGCTCGGCCGTGC
CGCCGCGGCGTTCGAACACGGTGCCGGCACCGGCCGCTGA

Upstream 100 bases:

>100_bases
CACGTGAACTTCACCGCCGAGACGCTCGACGCGGCGCTCGAGGCCGCGCACGACTGCGCGCGGCTGCTGCGCGTGCCGCT
CGACTGAGGGGCGCGCCACG

Downstream 100 bases:

>100_bases
AGCGCGGCGTACCCGATTCAGCGGCGAGCGGGCCGCCGGGCGCTCCGGCGGTCCATGAAACAACGCCCGGCGCAAGCGCC
GGGCGTTGTCGTCTGCGGCG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC [H]

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MTSDARPTPAGSAPDASGPHGVPAARIDEAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLP
PGGDPGYWVPALPADARRLIEAFWPGPLTLILKRAAHIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRAGHGGVAAPS
ANRFGHVSPTTAQHVRDEFGDAVHVLDGGAAEVGIESTILDLSRGFPALLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPR
ASGTLKAHYAPRTPLVLLPFGRLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAAPEDPQAYARELYGLLRALDR
ASVTRILVEQLPGTPEWAAVNDRLGRAAAAFEHGAGTGR

Sequences:

>Translated_359_residues
MTSDARPTPAGSAPDASGPHGVPAARIDEAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLP
PGGDPGYWVPALPADARRLIEAFWPGPLTLILKRAAHIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRAGHGGVAAPS
ANRFGHVSPTTAQHVRDEFGDAVHVLDGGAAEVGIESTILDLSRGFPALLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPR
ASGTLKAHYAPRTPLVLLPFGRLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAAPEDPQAYARELYGLLRALDR
ASVTRILVEQLPGTPEWAAVNDRLGRAAAAFEHGAGTGR
>Mature_358_residues
TSDARPTPAGSAPDASGPHGVPAARIDEAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLPP
GGDPGYWVPALPADARRLIEAFWPGPLTLILKRAAHIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRAGHGGVAAPSA
NRFGHVSPTTAQHVRDEFGDAVHVLDGGAAEVGIESTILDLSRGFPALLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPRA
SGTLKAHYAPRTPLVLLPFGRLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAAPEDPQAYARELYGLLRALDRA
SVTRILVEQLPGTPEWAAVNDRLGRAAAAFEHGAGTGR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (Probable) [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=209, Percent_Identity=30.1435406698565, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI2367210, Length=161, Percent_Identity=31.6770186335404, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=390, Percent_Identity=30.7692307692308, Blast_Score=136, Evalue=6e-33,
Organism=Drosophila melanogaster, GI78707274, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR005145
- InterPro:   IPR004388
- InterPro:   IPR006070
- InterPro:   IPR010923 [H]

Pfam domain/function: PF03481 SUA5; PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 36674; Mature: 36543

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDARPTPAGSAPDASGPHGVPAARIDEAAARLAAGELVAFPTETVYGLGGDAESPQAV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHEEECCCCCCCHHHH
ARIYAAKGRPANHPVIVHLPPGGDPGYWVPALPADARRLIEAFWPGPLTLILKRAAHIPD
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC
AVSGGQDSVGLRCPSHPVAQALLAAFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDEFG
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
DAVHVLDGGAAEVGIESTILDLSRGFPALLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPR
CEEEEECCCCHHHCHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
ASGTLKAHYAPRTPLVLLPFGRLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAA
CCCCEEEEECCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCEEEEEC
PEDPQAYARELYGLLRALDRASVTRILVEQLPGTPEWAAVNDRLGRAAAAFEHGAGTGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSDARPTPAGSAPDASGPHGVPAARIDEAAARLAAGELVAFPTETVYGLGGDAESPQAV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHEEECCCCCCCHHHH
ARIYAAKGRPANHPVIVHLPPGGDPGYWVPALPADARRLIEAFWPGPLTLILKRAAHIPD
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC
AVSGGQDSVGLRCPSHPVAQALLAAFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDEFG
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
DAVHVLDGGAAEVGIESTILDLSRGFPALLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPR
CEEEEECCCCHHHCHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
ASGTLKAHYAPRTPLVLLPFGRLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAA
CCCCEEEEECCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCEEEEEC
PEDPQAYARELYGLLRALDRASVTRILVEQLPGTPEWAAVNDRLGRAAAAFEHGAGTGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]