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The map label for this gene is ycjO [C]

Identifier: 238028484

GI number: 238028484

Start: 3336588

End: 3337532

Strand: Reverse

Name: ycjO [C]

Synonym: bglu_1g29480

Alternate gene names: 238028484

Gene position: 3337532-3336588 (Counterclockwise)

Preceding gene: 238028485

Following gene: 238028483

Centisome position: 85.44

GC content: 64.44

Gene sequence:

>945_bases
ATGCGTCACTTACGTCTTCCCCTACATCATCCGGCGCCCATGACCGATTCGTCTCCCGCCTCCGCCGCGTCCTCGCGCGG
CAAGCCCGCCCGCTGGCTCGTCGCGCCGTCGGTGGCGGTGCTGCTGCTGTGGATGTCGATCCCGCTCGCGATGACGATCT
GGTATTCGTTCCGGCGCTACAACCTGCTCAATCCGGACGAGAAGGGCTTCACCGGCCTCGACAACTACCGCTATCTGGCC
ACCGACCCGTCGTTCCTGCCCGCGATCTGGCATACGCTGGTGCTGATCGTGGCGGTGCTCGCGATCACCGTGGTCGGCGG
CGTGCTGATGGCCGTGCTGTTCGACCGCAAGTTCTATGGGCAGGGCATCGCGCGCCTGCTCGCGATCGCGCCGTTCTTCG
TGATGCCCACCGTCTCGGCGCTGATCTGGAAGAACATGATCCTGAACCCGGTCTACGGCCTGATCGCCCACCTGATGCGC
GGGCTCGGCATGACGCCGATCGACTGGTTCGCCGACTACCCGCTGAGCGCCGTGATCATGATCGTCGCCTGGCAATGGCT
GCCGTTCGCGTTCCTGATCCTGTTTACCGCGATCCAGTCGCTCGACCAGGAGCAGAAGGAGGCCGCGCGCATCGACGGCG
CCGGACCGTTCGCGATGTTCTTCTACATCACGCTGCCGCACCTCAAGCGCGCGATCGCCGTGGTGGTGATGATGGAAACC
ATCTTCCTGCTGTCGATCTTCGCCGAGATCTACACCACCACCGGCGGCGGCCCCGGCAACGCCACCACCAACCTGTCCTA
CCTGATCTATGCGCTCGGCCTGCAGCAGTTCGACGTGGGCCTTGCCTCGGCGGGCGGCATCCTCGCCGTCGTGCTCGCGA
ACGTCGTGTCGTTCTTCCTGGTGAGGATGCTCGCGAAAAACCTCAAAGGGGAGTACGAAGCATGA

Upstream 100 bases:

>100_bases
CAGTCGCGCGACCCGTGCCGGCCAGGCGCGGGTCGCCTCGCCGCAAGGCGCACGCGCTGCCGCGCGGCATGCGGGTGCGC
CAGTTTCAGGAGGTCCGAGC

Downstream 100 bases:

>100_bases
GCGACCTGACCGCAAACCGCGCCGCGGGCTCGCCGGGCGGCGCGTTCGGCACCGTGAAGCGCGCCATTCCCGGCGTGCTC
GCCTGGCTGATCGCGCTGCT

Product: Binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRHLRLPLHHPAPMTDSSPASAASSRGKPARWLVAPSVAVLLLWMSIPLAMTIWYSFRRYNLLNPDEKGFTGLDNYRYLA
TDPSFLPAIWHTLVLIVAVLAITVVGGVLMAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILNPVYGLIAHLMR
GLGMTPIDWFADYPLSAVIMIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMET
IFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLAKNLKGEYEA

Sequences:

>Translated_314_residues
MRHLRLPLHHPAPMTDSSPASAASSRGKPARWLVAPSVAVLLLWMSIPLAMTIWYSFRRYNLLNPDEKGFTGLDNYRYLA
TDPSFLPAIWHTLVLIVAVLAITVVGGVLMAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILNPVYGLIAHLMR
GLGMTPIDWFADYPLSAVIMIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMET
IFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLAKNLKGEYEA
>Mature_314_residues
MRHLRLPLHHPAPMTDSSPASAASSRGKPARWLVAPSVAVLLLWMSIPLAMTIWYSFRRYNLLNPDEKGFTGLDNYRYLA
TDPSFLPAIWHTLVLIVAVLAITVVGGVLMAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILNPVYGLIAHLMR
GLGMTPIDWFADYPLSAVIMIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMET
IFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLAKNLKGEYEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=216, Percent_Identity=33.7962962962963, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789861, Length=299, Percent_Identity=28.0936454849498, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790465, Length=266, Percent_Identity=27.8195488721804, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34673; Mature: 34673

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLRLPLHHPAPMTDSSPASAASSRGKPARWLVAPSVAVLLLWMSIPLAMTIWYSFRRY
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
NLLNPDEKGFTGLDNYRYLATDPSFLPAIWHTLVLIVAVLAITVVGGVLMAVLFDRKFYG
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGIARLLAIAPFFVMPTVSALIWKNMILNPVYGLIAHLMRGLGMTPIDWFADYPLSAVIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHH
IVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH
VRMLAKNLKGEYEA
HHHHHHHCCCCCCC
>Mature Secondary Structure
MRHLRLPLHHPAPMTDSSPASAASSRGKPARWLVAPSVAVLLLWMSIPLAMTIWYSFRRY
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
NLLNPDEKGFTGLDNYRYLATDPSFLPAIWHTLVLIVAVLAITVVGGVLMAVLFDRKFYG
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGIARLLAIAPFFVMPTVSALIWKNMILNPVYGLIAHLMRGLGMTPIDWFADYPLSAVIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHH
IVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH
VRMLAKNLKGEYEA
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]