| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yieH [H]
Identifier: 238028482
GI number: 238028482
Start: 3335018
End: 3335737
Strand: Reverse
Name: yieH [H]
Synonym: bglu_1g29460
Alternate gene names: 238028482
Gene position: 3335737-3335018 (Counterclockwise)
Preceding gene: 238028483
Following gene: 238028481
Centisome position: 85.39
GC content: 75.69
Gene sequence:
>720_bases ATGAGCGCGAGCGACATGCGCCTGCCCGCCGGCGAGGGCCGCGACCGCCTGCTGATCTGCGATTGCGACGGCGTGCTGAT CGACAGCGAGGCGGTGGCCGCGCGCGTGCTGGTGAGCGAGCTGGAGGCGCGCTGGCCCGGCGTGGACGTGCGCCCGGTGG TGCTGCCGCTGCTCGGGCTGCGCACCGAGTGCCTGCTCGAGCGCGCGGCCGGCCAGGTCGGCCGCGCGCTTGCGGGCGCC GAGATCGCGGCGATCCGCGCGGCGGTGGAGCGCGCGGCGGTGCTCGCGCCGGCCGTGGACGGCATCGACGCGGCGCTCGC CGCGATCGCGCTGCCGATGGCCTGCGCCAGCAACAGCAATCGCGCCTATGTGGAGGCGGCGCTCACGCGCACCGGCCTCA AGCCCTACTTCGGCGAGCGGCTGTTCTGCGCCGACGGCGTTGAACGGCCCAAGCCCGCGCCCGACGTCTATCTGGCCGCC GCCCACACGCTCGGCTTCGCGCCCGAGCACTGCCTGGTGGTGGAGGACAGCGCCACCGGCATCACCGCCGCGGCCGCGGC CGGGATGGCCGTGATCGGCTTCATCGGCGGCGGCCATGCCTCGCCGTCGCAGGTCGATGCGCTGCGCGCGGTCGGCGCGC GCCGCGTGTTCGACCGGATGGACGCCTTGCCCGGCCTGGCCGCGCAGTGGATCGAGACCGGCAGCGTGCCGTTGCAGTAG
Upstream 100 bases:
>100_bases AGCTGTCGGCGGCCTCGCTGCTGGCCGTGGCGCCGATCCTGATCGTCGGCTGGCTGTCGCAGAAGCAACTGGTGCGCGGC CTCACGTTCGGAGCGGTCAA
Downstream 100 bases:
>100_bases GCGAAACGAATCGCGTGCCGCGCCGGCGCCACCGGCCGCGCGGCGCGTCACGAAATCAGCGGTAAGGAAAGCGGAGACAA ATCATGGCAAGCCTGCTTCT
Product: HAD-superfamily hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSASDMRLPAGEGRDRLLICDCDGVLIDSEAVAARVLVSELEARWPGVDVRPVVLPLLGLRTECLLERAAGQVGRALAGA EIAAIRAAVERAAVLAPAVDGIDAALAAIALPMACASNSNRAYVEAALTRTGLKPYFGERLFCADGVERPKPAPDVYLAA AHTLGFAPEHCLVVEDSATGITAAAAAGMAVIGFIGGGHASPSQVDALRAVGARRVFDRMDALPGLAAQWIETGSVPLQ
Sequences:
>Translated_239_residues MSASDMRLPAGEGRDRLLICDCDGVLIDSEAVAARVLVSELEARWPGVDVRPVVLPLLGLRTECLLERAAGQVGRALAGA EIAAIRAAVERAAVLAPAVDGIDAALAAIALPMACASNSNRAYVEAALTRTGLKPYFGERLFCADGVERPKPAPDVYLAA AHTLGFAPEHCLVVEDSATGITAAAAAGMAVIGFIGGGHASPSQVDALRAVGARRVFDRMDALPGLAAQWIETGSVPLQ >Mature_238_residues SASDMRLPAGEGRDRLLICDCDGVLIDSEAVAARVLVSELEARWPGVDVRPVVLPLLGLRTECLLERAAGQVGRALAGAE IAAIRAAVERAAVLAPAVDGIDAALAAIALPMACASNSNRAYVEAALTRTGLKPYFGERLFCADGVERPKPAPDVYLAAA HTLGFAPEHCLVVEDSATGITAAAAAGMAVIGFIGGGHASPSQVDALRAVGARRVFDRMDALPGLAAQWIETGSVPLQ
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates phosphoenolpyruvate and AMP [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1790151, Length=192, Percent_Identity=28.6458333333333, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789046, Length=176, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 24617; Mature: 24485
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASDMRLPAGEGRDRLLICDCDGVLIDSEAVAARVLVSELEARWPGVDVRPVVLPLLGL CCCCCCCCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC RTECLLERAAGQVGRALAGAEIAAIRAAVERAAVLAPAVDGIDAALAAIALPMACASNSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC RAYVEAALTRTGLKPYFGERLFCADGVERPKPAPDVYLAAAHTLGFAPEHCLVVEDSATG CEEHHHHHHHCCCCHHHCCEEEECCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEECCCCC ITAAAAAGMAVIGFIGGGHASPSQVDALRAVGARRVFDRMDALPGLAAQWIETGSVPLQ HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC >Mature Secondary Structure SASDMRLPAGEGRDRLLICDCDGVLIDSEAVAARVLVSELEARWPGVDVRPVVLPLLGL CCCCCCCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC RTECLLERAAGQVGRALAGAEIAAIRAAVERAAVLAPAVDGIDAALAAIALPMACASNSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC RAYVEAALTRTGLKPYFGERLFCADGVERPKPAPDVYLAAAHTLGFAPEHCLVVEDSATG CEEHHHHHHHCCCCHHHCCEEEECCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEECCCCC ITAAAAAGMAVIGFIGGGHASPSQVDALRAVGARRVFDRMDALPGLAAQWIETGSVPLQ HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]