| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is icd [H]
Identifier: 238028427
GI number: 238028427
Start: 3276014
End: 3278242
Strand: Reverse
Name: icd [H]
Synonym: bglu_1g28910
Alternate gene names: 238028427
Gene position: 3278242-3276014 (Counterclockwise)
Preceding gene: 238028428
Following gene: 238028425
Centisome position: 83.92
GC content: 65.99
Gene sequence:
>2229_bases ATGTCCACCTCGTCCAAGATCATCTACACCCTTACCGACGAAGCTCCGGCGCTGGCGACCTATTCGCTGCTGCCGATCGT CAAGGCCTTCACGCGCTCGTCGGGCGTGGCCGTCGAAACCCGCGACATCTCGCTCGCCGGCCGTATCATCGCCGCGTTTC CCGAGGCGCTCACTCCCGAGCAGAAGATCAGCGACGATCTCGCCGAGCTTGGCCAGCTGACCTTGCGTCCCGAAGCGAAC ATCATCAAGCTGCCGAACATCAGCGCCTCGGTGCCGCAGCTGAAGGCCGCGATCGCCGAGCTGCAGGCGCAGGGCTACAA GCTGCCGAACTATCCCGACGAAGCGAGCAGCGACGCCGAGAAGGACGCCAAGGCCCGCTACGACAAGATCAAGGGCAGCG CCGTGAACCCGGTGCTGCGCGAAGGCAACTCGGACCGCCGCGCGCCGCTGTCGGTCAAGAGCTACGCCCGCAAGCACCCG CACAAGATGGGAGCCTGGACCGCCGATTCGAAATCGCACGTCGCGCACATGAGCGAGGGCGACTTCTACGGCAGCGAGAA GTCGGCGCTGATCGACGCGGCCGGCAGCGTCAGGATCGAACTGACCACGGCCGATGGTACGAAGAAGGTGCTGAAGGAAA AGACCGTCGTCAAGGCCGGTGAAATCATCGACGCCTCGGTGATGAGCCGCACCGCGCTGCGCAGCTTCATCGAGGCGCAG ATCGCCGACGCGAAGGCCCGCGGCGTGCTGTTCTCGGTCCACCTGAAGGCGACCATGATGAAGGTCTCCGATCCGATCCT GTTCGGCCAGTTCGTGTCGGTGTTCTACGAGGACGTGCTGACCAAGCACGCCGAGACGCTCGTCAAGATCGGCTTCAACC CGAACAACGGCATCGGCGACCTGTACGCACGCCTGAAGGACCTGCCGGCCGAGAAGCGCGCCGAGATCGAAGCCGACATC AAGGCCCAGTATGAAAAGCGCCCGTCCCTCGCGATGGTCAATTCGGACAAGGGCATCACGAACCTGCACGTGCCGAGCGA CGTGATCGTCGACGCCTCGATGCCGGCCATGATCCGCGATTCGGGCGGCATGTGGGGCGCGGACGGCAAGCTGCACGACG CCAAGGCCGTGATTCCGGACCGCTGCTACGCGGGCGTCTACCAGGCCGTGATCGACGACTGCAAGCAGCACGGCGCGTTC GATCCCGTCACCATGGGCAGCGTGCCGAACGTGGGCCTGATGGCGCAGGCGGCCGAGGAATACGGTTCGCACGACAAGAC CTTCCAGATCACGGCCGACGGCGTGGTGCGCGTGACCGACGAGGCCGGCCGCGTGCTGCTCGAGCATGAAGTGAAGTCGG GCGACATCTGGCGCATGTGCCAGACCAAGGACGCGCCGGTGCAGGACTGGGTCAAGCTGGCCGTGAAGCGCGCGCGCGCC TCGAACACGCCCGCCGTGTTCTGGCTCGACGCCGCGCGTGCCCACGACGCGCAGATCATCAAGAAGGTCGAGCGGTATCT GAAGGATCACGACACCAACGGTCTCGACATCCGGATCCTGCCGCCCGTCGAGGCGACGCGCTTCTCGCTCGAGCGCATCC GCGCCGGCAAGGACACCATCTCGGTGACCGGCAACGTGCTGCGCGACTACCTGACCGATCTGTTCCCGATCATGGAACTG GGCACCAGCGCGAAGATGCTGTCGATCGTGCCGCTGATGGCGGGCGGCGGCATGTTCGAAACCGGCGCGGGCGGCTCGGC GCCGAAGCACGTGCAGCAGTTCAACGAGGAAGGCTTCCTGCGCTGGGATTCGCTCGGCGAATTCCTCGCGCTGGCCGCTT CGCTCGAGCACCTCGGCAACGCCTATCACAACCCCAAGGCACTGGTGCTCGCGAAGACGCTCGACCAGGCCACCGGCAAG TTCCTCGACGAGAACCGTTCGCCGGCACGCAAGGTGGGCGGCATCGACAACCGCGGCAGCCATTTCTACCTGTGCCTGTT CTGGGCGCAGGCGCTGGCCGCGCAGACCGAGGACGCGGAACTGGCCGCGCAATTCGCCGGTGTCGCCAAGACGCTGACGG AAAACGAGGCACGCATCGTGGCGGAACTGGGCGCGGCGCAGGGCAAGCCGGTCGACATCGGCGGCTACTACCGTCCGGAC GCCGCGCTGACTAGCCGGGCCATGCGTCCGAGCGCGACGCTCAACGGCGTGATCGACGCACTGGCGTAA
Upstream 100 bases:
>100_bases CTAAGGTTCGTCGGCGCTTGTTCGCGGTCGGTTCGATCGCGGCCCGTTGGGTTCGCTGTCAGCGATCTTCTGTCAATTTT CTCGTAGCAACGCATCAACC
Downstream 100 bases:
>100_bases GCCGTGCGGGCGGTGCCGAGTCCGGCGTTCAACGCGCGAGCGCGCGGCGGCGGCAAGGTGCCCGCTCCAACGCGGCGCAG GCGGCGAACGTCACCGCCTG
Product: Isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 742; Mature: 741
Protein sequence:
>742_residues MSTSSKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFPEALTPEQKISDDLAELGQLTLRPEAN IIKLPNISASVPQLKAAIAELQAQGYKLPNYPDEASSDAEKDAKARYDKIKGSAVNPVLREGNSDRRAPLSVKSYARKHP HKMGAWTADSKSHVAHMSEGDFYGSEKSALIDAAGSVRIELTTADGTKKVLKEKTVVKAGEIIDASVMSRTALRSFIEAQ IADAKARGVLFSVHLKATMMKVSDPILFGQFVSVFYEDVLTKHAETLVKIGFNPNNGIGDLYARLKDLPAEKRAEIEADI KAQYEKRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGGMWGADGKLHDAKAVIPDRCYAGVYQAVIDDCKQHGAF DPVTMGSVPNVGLMAQAAEEYGSHDKTFQITADGVVRVTDEAGRVLLEHEVKSGDIWRMCQTKDAPVQDWVKLAVKRARA SNTPAVFWLDAARAHDAQIIKKVERYLKDHDTNGLDIRILPPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFNEEGFLRWDSLGEFLALAASLEHLGNAYHNPKALVLAKTLDQATGK FLDENRSPARKVGGIDNRGSHFYLCLFWAQALAAQTEDAELAAQFAGVAKTLTENEARIVAELGAAQGKPVDIGGYYRPD AALTSRAMRPSATLNGVIDALA
Sequences:
>Translated_742_residues MSTSSKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFPEALTPEQKISDDLAELGQLTLRPEAN IIKLPNISASVPQLKAAIAELQAQGYKLPNYPDEASSDAEKDAKARYDKIKGSAVNPVLREGNSDRRAPLSVKSYARKHP HKMGAWTADSKSHVAHMSEGDFYGSEKSALIDAAGSVRIELTTADGTKKVLKEKTVVKAGEIIDASVMSRTALRSFIEAQ IADAKARGVLFSVHLKATMMKVSDPILFGQFVSVFYEDVLTKHAETLVKIGFNPNNGIGDLYARLKDLPAEKRAEIEADI KAQYEKRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGGMWGADGKLHDAKAVIPDRCYAGVYQAVIDDCKQHGAF DPVTMGSVPNVGLMAQAAEEYGSHDKTFQITADGVVRVTDEAGRVLLEHEVKSGDIWRMCQTKDAPVQDWVKLAVKRARA SNTPAVFWLDAARAHDAQIIKKVERYLKDHDTNGLDIRILPPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFNEEGFLRWDSLGEFLALAASLEHLGNAYHNPKALVLAKTLDQATGK FLDENRSPARKVGGIDNRGSHFYLCLFWAQALAAQTEDAELAAQFAGVAKTLTENEARIVAELGAAQGKPVDIGGYYRPD AALTSRAMRPSATLNGVIDALA >Mature_741_residues STSSKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFPEALTPEQKISDDLAELGQLTLRPEANI IKLPNISASVPQLKAAIAELQAQGYKLPNYPDEASSDAEKDAKARYDKIKGSAVNPVLREGNSDRRAPLSVKSYARKHPH KMGAWTADSKSHVAHMSEGDFYGSEKSALIDAAGSVRIELTTADGTKKVLKEKTVVKAGEIIDASVMSRTALRSFIEAQI ADAKARGVLFSVHLKATMMKVSDPILFGQFVSVFYEDVLTKHAETLVKIGFNPNNGIGDLYARLKDLPAEKRAEIEADIK AQYEKRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGGMWGADGKLHDAKAVIPDRCYAGVYQAVIDDCKQHGAFD PVTMGSVPNVGLMAQAAEEYGSHDKTFQITADGVVRVTDEAGRVLLEHEVKSGDIWRMCQTKDAPVQDWVKLAVKRARAS NTPAVFWLDAARAHDAQIIKKVERYLKDHDTNGLDIRILPPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFNEEGFLRWDSLGEFLALAASLEHLGNAYHNPKALVLAKTLDQATGKF LDENRSPARKVGGIDNRGSHFYLCLFWAQALAAQTEDAELAAQFAGVAKTLTENEARIVAELGAAQGKPVDIGGYYRPDA ALTSRAMRPSATLNGVIDALA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80254; Mature: 80123
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSSKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFPEALTPE CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCHHCCCH QKISDDLAELGQLTLRPEANIIKLPNISASVPQLKAAIAELQAQGYKLPNYPDEASSDAE HHHHHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KDAKARYDKIKGSAVNPVLREGNSDRRAPLSVKSYARKHPHKMGAWTADSKSHVAHMSEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHEECCCC DFYGSEKSALIDAAGSVRIELTTADGTKKVLKEKTVVKAGEIIDASVMSRTALRSFIEAQ CCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH IADAKARGVLFSVHLKATMMKVSDPILFGQFVSVFYEDVLTKHAETLVKIGFNPNNGIGD HHCHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHH LYARLKDLPAEKRAEIEADIKAQYEKRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHHHCCCHHHHCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCEEEEC SGGMWGADGKLHDAKAVIPDRCYAGVYQAVIDDCKQHGAFDPVTMGSVPNVGLMAQAAEE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH YGSHDKTFQITADGVVRVTDEAGRVLLEHEVKSGDIWRMCQTKDAPVQDWVKLAVKRARA HCCCCCEEEEEECCEEEEECCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHC SNTPAVFWLDAARAHDAQIIKKVERYLKDHDTNGLDIRILPPVEATRFSLERIRAGKDTI CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFNEEGFL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCCCE RWDSLGEFLALAASLEHLGNAYHNPKALVLAKTLDQATGKFLDENRSPARKVGGIDNRGS EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHCCCCCCCC HFYLCLFWAQALAAQTEDAELAAQFAGVAKTLTENEARIVAELGAAQGKPVDIGGYYRPD EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCCCEECCC AALTSRAMRPSATLNGVIDALA HHHHHHCCCCCHHHHHHHHHCC >Mature Secondary Structure STSSKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFPEALTPE CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCHHCCCH QKISDDLAELGQLTLRPEANIIKLPNISASVPQLKAAIAELQAQGYKLPNYPDEASSDAE HHHHHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KDAKARYDKIKGSAVNPVLREGNSDRRAPLSVKSYARKHPHKMGAWTADSKSHVAHMSEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHEECCCC DFYGSEKSALIDAAGSVRIELTTADGTKKVLKEKTVVKAGEIIDASVMSRTALRSFIEAQ CCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH IADAKARGVLFSVHLKATMMKVSDPILFGQFVSVFYEDVLTKHAETLVKIGFNPNNGIGD HHCHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHH LYARLKDLPAEKRAEIEADIKAQYEKRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHHHCCCHHHHCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCEEEEC SGGMWGADGKLHDAKAVIPDRCYAGVYQAVIDDCKQHGAFDPVTMGSVPNVGLMAQAAEE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH YGSHDKTFQITADGVVRVTDEAGRVLLEHEVKSGDIWRMCQTKDAPVQDWVKLAVKRARA HCCCCCEEEEEECCEEEEECCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHC SNTPAVFWLDAARAHDAQIIKKVERYLKDHDTNGLDIRILPPVEATRFSLERIRAGKDTI CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFNEEGFL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCCCE RWDSLGEFLALAASLEHLGNAYHNPKALVLAKTLDQATGKFLDENRSPARKVGGIDNRGS EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHCCCCCCCC HFYLCLFWAQALAAQTEDAELAAQFAGVAKTLTENEARIVAELGAAQGKPVDIGGYYRPD EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCCCEECCC AALTSRAMRPSATLNGVIDALA HHHHHHCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]