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The map label for this gene is rsmB [H]

Identifier: 238028410

GI number: 238028410

Start: 3256072

End: 3257457

Strand: Reverse

Name: rsmB [H]

Synonym: bglu_1g28740

Alternate gene names: 238028410

Gene position: 3257457-3256072 (Counterclockwise)

Preceding gene: 238028411

Following gene: 238028409

Centisome position: 83.39

GC content: 71.14

Gene sequence:

>1386_bases
ATGAAGCTGCATGGTTTTCTGATTGGTCAAACCGAGACCTTGCTCGCCGAGGTCCTGAAATTCACCGGCCCCGCCGACGC
CGCCACCAGCCGGTTCTTCCGTGCGCATCCGAAGCTCGGCCACGGCGAGCGCGGCGTGATCGCCGAGGCGGTGTTCGCGG
TGCTGCGCCGGAAGATGGAGTTCTCGCACCTGGCCGAAAGCGGCTCGGGCAGCCCGGCGCGGCGCCTGACGCTGCTCGGG
CTGATGCAGACGGCGGGCCGCTCGGCGCTCCGGCAGCATGTGTCGGACGCGGAGTGGGCATGGCTCGAGCACGTCGCGAA
GATCGATCCGGCCAGCCTGCCGCTGCGCGTGCGCACCAACCTGCCCGACTGGATCCATCAGGCGCTCGGCCAGCGCTTCG
ACGCCGAGGCGCTCGCGCAGTTCGCGGCCGCCGTCAACTATCCGGCGCCGCTGGATCTGCGCGTGAACCTGCAGAAGGCG
ACCCGCGAGCAGGTGCTCGATGCGCTGCGCATTGCCGGCATCGAGGCCGGCGAGACGCCGTTCGCGCCGAACGGCGTGCG
CGTGGTCGGCAAGCCGGCGCTGACGCGGCTGCCGATCTTCCAGGACGGCCTGATCGAAGTGCAGGACGAGGGCAGCCAAC
TGCTCTGTTCGCTCGTCGCCCCGCGCCGCGGCGAGATGATCGTCGACTTTTGCGCCGGCGCCGGCGGCAAGACGCTCGCG
CTCGGCGCGGCGATGCGCTCCACCGGCCGGCTCTATGCATTCGACGTCTCCGAGAAGCGGCTCGCCAAGCTCAAGCCGCG
CCTCGCGCGCAGCGGGCTGTCGAACGTGAACCCGGTGCTGATCGACAGCGAGCACGACGCGAAGATCAAGCGGCTCGCCG
GCAAGATCGACCGCGTGCTGGTGGATGCGCCGTGCAGCGGGCTCGGCACGCTGCGCCGCAATCCCGACCTGAAGTGGCGC
CAGACGCGCGACTCGATCGAGGAACTCGCGCCGAAGCAGGCCTCGATCCTGGCCAGCGCCGCGCGTCTCGTGAAGGCGGG
CGGGCGGCTCGTCTACGCGACCTGCAGCGTGCTGGAGGCCGAGAACGAGGCGATCGTCACGCAGTTTCTCGCCGCGCATC
CCGATTTCGTGCTGGTGCCGGCCAGCCAGGTGCTCGCCGAGCAGCGCATCGGGCTCGATACGGGCGATTACCTGTCGCTG
TGGCCGCATCGTCACGCCACCGACGGTTTCTTCGCCGCCGTGCTCGAACGCCGTCCGAAGCCGGCCGCCAAGGCCGCGGG
GAAGCCGGCCCCCGAGCCAGCGGCCGGGAACCAGGCCGAGGCGGCAGGGCAAGCGGCCGGGCCGACGGCGCAGGAGTCCG
CCGGGCCGGCCGCCGATCAGGCCTGA

Upstream 100 bases:

>100_bases
TCGAGGGCCGGCTGCGGCTCGACGGCGGCCGTGCGGTGGTCGCGCCCGGCGCGTGCCGATGGCTCGTCGCCGCCGACAAC
AACGAACAGGGTGAGGGTGT

Downstream 100 bases:

>100_bases
GGGCCGTGCGATGGACGGCCTCGGAGCCGCAATGGCTGGCCTGCGCGAGCCTTGATGTCGGGCAGCCGGAGGCGATCTCG
TAGCTCGCGGTCAGTCGGGA

Product: NOL1/NOP2/sun family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKLHGFLIGQTETLLAEVLKFTGPADAATSRFFRAHPKLGHGERGVIAEAVFAVLRRKMEFSHLAESGSGSPARRLTLLG
LMQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRVRTNLPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKA
TREQVLDALRIAGIEAGETPFAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QTRDSIEELAPKQASILASAARLVKAGGRLVYATCSVLEAENEAIVTQFLAAHPDFVLVPASQVLAEQRIGLDTGDYLSL
WPHRHATDGFFAAVLERRPKPAAKAAGKPAPEPAAGNQAEAAGQAAGPTAQESAGPAADQA

Sequences:

>Translated_461_residues
MKLHGFLIGQTETLLAEVLKFTGPADAATSRFFRAHPKLGHGERGVIAEAVFAVLRRKMEFSHLAESGSGSPARRLTLLG
LMQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRVRTNLPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKA
TREQVLDALRIAGIEAGETPFAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QTRDSIEELAPKQASILASAARLVKAGGRLVYATCSVLEAENEAIVTQFLAAHPDFVLVPASQVLAEQRIGLDTGDYLSL
WPHRHATDGFFAAVLERRPKPAAKAAGKPAPEPAAGNQAEAAGQAAGPTAQESAGPAADQA
>Mature_461_residues
MKLHGFLIGQTETLLAEVLKFTGPADAATSRFFRAHPKLGHGERGVIAEAVFAVLRRKMEFSHLAESGSGSPARRLTLLG
LMQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRVRTNLPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKA
TREQVLDALRIAGIEAGETPFAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QTRDSIEELAPKQASILASAARLVKAGGRLVYATCSVLEAENEAIVTQFLAAHPDFVLVPASQVLAEQRIGLDTGDYLSL
WPHRHATDGFFAAVLERRPKPAAKAAGKPAPEPAAGNQAEAAGQAAGPTAQESAGPAADQA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=310, Percent_Identity=30.6451612903226, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI76150623, Length=310, Percent_Identity=30.6451612903226, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI23199998, Length=307, Percent_Identity=29.6416938110749, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI32698918, Length=187, Percent_Identity=33.1550802139037, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI270288816, Length=271, Percent_Identity=30.6273062730627, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI270288818, Length=266, Percent_Identity=30.8270676691729, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI8922322, Length=270, Percent_Identity=30.7407407407407, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI301336155, Length=254, Percent_Identity=29.9212598425197, Blast_Score=76, Evalue=9e-14,
Organism=Homo sapiens, GI39995082, Length=278, Percent_Identity=28.7769784172662, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI40316918, Length=188, Percent_Identity=31.3829787234043, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI11545785, Length=167, Percent_Identity=31.7365269461078, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI2367212, Length=259, Percent_Identity=34.3629343629344, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081985, Length=313, Percent_Identity=27.7955271565495, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17536757, Length=299, Percent_Identity=30.1003344481605, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115534021, Length=220, Percent_Identity=33.1818181818182, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71998419, Length=220, Percent_Identity=33.6363636363636, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25143471, Length=306, Percent_Identity=29.0849673202614, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=298, Percent_Identity=27.8523489932886, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319447, Length=263, Percent_Identity=28.1368821292776, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI22024126, Length=308, Percent_Identity=28.2467532467532, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21356579, Length=327, Percent_Identity=24.1590214067278, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21355201, Length=301, Percent_Identity=25.9136212624585, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21356513, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24668781, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19920494, Length=150, Percent_Identity=32.6666666666667, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49322; Mature: 49322

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHGFLIGQTETLLAEVLKFTGPADAATSRFFRAHPKLGHGERGVIAEAVFAVLRRKME
CCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FSHLAESGSGSPARRLTLLGLMQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRVRTN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECC
LPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKATREQVLDALRIAGIEAGETP
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
FAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEMIVDFCAGAGGKTLA
CCCCCCEEECCCCHHCCCCCCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEE
LGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQASILASAARLVKAGGRLVYATCSVLEA
EECCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHC
ENEAIVTQFLAAHPDFVLVPASQVLAEQRIGLDTGDYLSLWPHRHATDGFFAAVLERRPK
CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC
PAAKAAGKPAPEPAAGNQAEAAGQAAGPTAQESAGPAADQA
CHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MKLHGFLIGQTETLLAEVLKFTGPADAATSRFFRAHPKLGHGERGVIAEAVFAVLRRKME
CCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FSHLAESGSGSPARRLTLLGLMQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRVRTN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECC
LPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKATREQVLDALRIAGIEAGETP
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
FAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEMIVDFCAGAGGKTLA
CCCCCCEEECCCCHHCCCCCCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEE
LGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQASILASAARLVKAGGRLVYATCSVLEA
EECCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHC
ENEAIVTQFLAAHPDFVLVPASQVLAEQRIGLDTGDYLSLWPHRHATDGFFAAVLERRPK
CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC
PAAKAAGKPAPEPAAGNQAEAAGQAAGPTAQESAGPAADQA
CHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]