| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028388
Identifier: 238028388
GI number: 238028388
Start: 3230297
End: 3232120
Strand: Reverse
Name: 238028388
Synonym: bglu_1g28490
Alternate gene names: NA
Gene position: 3232120-3230297 (Counterclockwise)
Preceding gene: 238028393
Following gene: 238028387
Centisome position: 82.74
GC content: 56.03
Gene sequence:
>1824_bases ATGAGACTGGAATCTGTTTCGATAAAAAACTTCCGTTGCTACCGTGAAGAGACCACGGTATCTATGGCGGACCTGACGAC TTTTGTTGGGAAAAATGACATAGGAAAGTCCTCGGTCCTCGAGGCGCTGGAGATCTTCTTCAACAACGAAACTGTCAAGA TAGAGCAGGGTGACGCGAACATCTACAGCGGCGCCCCCCTGGTTTCTATCACCTGCGAATTTTCTGATTTGCCATCCCAG TTGAGCCTCGACGCAGGGGCAGAGACGACTCTAGCAGCAGAATACCTTCTCTCTACCAGGGGCACCCTGAAGATCCAAAA GGTATTCGATTGCAGCAAGAAGACGCCGTCCGCCGAAGTGTATATCCTTGCGAACCACCCGACGGCAACCGGGGTTGCAG ACCTTCTTGATCTGAAGGAAAAGGATCTTCAAAAGCTTGTAAAAGACCAGAAGCTCGATGCCGCGCTTAAAGGGAATCCA GGTATGCGGCGGGCCTTGTGGGCGGCGGCGAAAGACCTCGAACTGCAGGAAGTGGCTCTTCCTGTCACCAAGCCGAAGGA AGATAGCAAACGGATCTGGGATCAGCTCGAAAACTACTTGCCGATGTATGCGCTGTTTCAGAGCGATCGGAGCAGCCGCG ATTCTGACGGGGAGGTACAAAATCCGATGAGGGCAGCAGTGGCAGCCGCCATCGCCGAAGTGCAGGACGACATCAACCGG ATTCAGGAAAAGGTTCGCGAGAAAGCCGAGCTAATTGCGAAGATCACTCACGAAGCTTTGAAGACGATCGACCCCAACCT TGCCAAGGAGCTGACGCCGCAATTCATGCCACCGACTGCAGCCAAGTGGACCGGGTTGTTTTCGGTCGGCATGGACACCG ACGACGGCATTCCGCTAAACAAGCGCGGCAGCGGCGTCCGTCGCCTTGTCTTGGTTGCCTTTTTCAAGGCGGAAGCGGAG CGCAGGTTGAAGGCCGGCACCAGCAGGAGCATCATTTACGCGATCGAGGAGCCCGAGACGGCGCAGCACCCGAACAACCA ACGCATCCTTATAGAGTCATTCAAGACGTTGGCTTTGGAGCCCGGATGTCAGGTTTTGCTCACGACGCACAGCCCCGGCT TCGCGTCGGATCTGCCTACCGCCAGTATCAGGTTTGTAACGCGAGACGCGGCTCTTCAACCCGTGATCCTGGAGGGCGCA GACGTATTCGGGCAGGTGGCTGAAACGCTCGGTGTCGTGCCGGATAGTCGTGTCAAAGTCCTACTTTGCGTCGAAGGACC GACAGACGTGGCCGCCTTTAAATCGCTCAGTCGGGCGTTACATTTGACCGACCCAACCCTGCCGAACCTAGCTTCGGATG ACCGAGTGGCCTTCGTATTGCTCGGTGGCTCAACGCTCAAGCATTGGGTCACACAACATTATCTCCGGTCGCTCAATCGT CCCGAGGTCCATATCTACGACAGCGACGTGGCCAAGTATGCGGAATCTGTTGCTGAGGTAAACCTGCGCACGGATGGCTC CTGGGCCGTGCAAACGAACAAGCACGAGATCGAATGCTATCTGCATGCGGACGCGATCAAGGATGCTTTTGGCGTCGAGA TTGTCGTCGTCGATCAGCCCGGCGCCGACGGGAAGTCTGTCCCGAAGATTTTCGCTGAAGCCTTCTCTGCGAAGCAACAG TACGATGGGGTTATGGGCGATGAAAAAGCAAAGCTACGCCTCGCGGATAAGGCATTTCCCATGATGACTGCGGAGCGGCT GGCCGAAAGGGATCCCGCACGAGAGGTTGAGGGGTGGTTCCGCAGACTTGGGGCGATGCTGTAA
Upstream 100 bases:
>100_bases CGTCGGCCAAGACTCTGTTCGCTGCGCTCAGAGGTCCGCCGTCCACCTCAGAGTAATATTTGACGGCTCGAACTGTCGGG CTACAAATAAGGAGAGCGAG
Downstream 100 bases:
>100_bases GCGCCGGATACGCGGGCCGCGCGCTTGCGGCCCGTGCGACAGGAGTGACATAGCTGCCGGCCACGAATGGCACTTTTTGA AGCTATGTGATCACTCCCCT
Product: ATP-dependent OLD family endonuclease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIFFNNETVKIEQGDANIYSGAPLVSITCEFSDLPSQ LSLDAGAETTLAAEYLLSTRGTLKIQKVFDCSKKTPSAEVYILANHPTATGVADLLDLKEKDLQKLVKDQKLDAALKGNP GMRRALWAAAKDLELQEVALPVTKPKEDSKRIWDQLENYLPMYALFQSDRSSRDSDGEVQNPMRAAVAAAIAEVQDDINR IQEKVREKAELIAKITHEALKTIDPNLAKELTPQFMPPTAAKWTGLFSVGMDTDDGIPLNKRGSGVRRLVLVAFFKAEAE RRLKAGTSRSIIYAIEEPETAQHPNNQRILIESFKTLALEPGCQVLLTTHSPGFASDLPTASIRFVTRDAALQPVILEGA DVFGQVAETLGVVPDSRVKVLLCVEGPTDVAAFKSLSRALHLTDPTLPNLASDDRVAFVLLGGSTLKHWVTQHYLRSLNR PEVHIYDSDVAKYAESVAEVNLRTDGSWAVQTNKHEIECYLHADAIKDAFGVEIVVVDQPGADGKSVPKIFAEAFSAKQQ YDGVMGDEKAKLRLADKAFPMMTAERLAERDPAREVEGWFRRLGAML
Sequences:
>Translated_607_residues MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIFFNNETVKIEQGDANIYSGAPLVSITCEFSDLPSQ LSLDAGAETTLAAEYLLSTRGTLKIQKVFDCSKKTPSAEVYILANHPTATGVADLLDLKEKDLQKLVKDQKLDAALKGNP GMRRALWAAAKDLELQEVALPVTKPKEDSKRIWDQLENYLPMYALFQSDRSSRDSDGEVQNPMRAAVAAAIAEVQDDINR IQEKVREKAELIAKITHEALKTIDPNLAKELTPQFMPPTAAKWTGLFSVGMDTDDGIPLNKRGSGVRRLVLVAFFKAEAE RRLKAGTSRSIIYAIEEPETAQHPNNQRILIESFKTLALEPGCQVLLTTHSPGFASDLPTASIRFVTRDAALQPVILEGA DVFGQVAETLGVVPDSRVKVLLCVEGPTDVAAFKSLSRALHLTDPTLPNLASDDRVAFVLLGGSTLKHWVTQHYLRSLNR PEVHIYDSDVAKYAESVAEVNLRTDGSWAVQTNKHEIECYLHADAIKDAFGVEIVVVDQPGADGKSVPKIFAEAFSAKQQ YDGVMGDEKAKLRLADKAFPMMTAERLAERDPAREVEGWFRRLGAML >Mature_607_residues MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIFFNNETVKIEQGDANIYSGAPLVSITCEFSDLPSQ LSLDAGAETTLAAEYLLSTRGTLKIQKVFDCSKKTPSAEVYILANHPTATGVADLLDLKEKDLQKLVKDQKLDAALKGNP GMRRALWAAAKDLELQEVALPVTKPKEDSKRIWDQLENYLPMYALFQSDRSSRDSDGEVQNPMRAAVAAAIAEVQDDINR IQEKVREKAELIAKITHEALKTIDPNLAKELTPQFMPPTAAKWTGLFSVGMDTDDGIPLNKRGSGVRRLVLVAFFKAEAE RRLKAGTSRSIIYAIEEPETAQHPNNQRILIESFKTLALEPGCQVLLTTHSPGFASDLPTASIRFVTRDAALQPVILEGA DVFGQVAETLGVVPDSRVKVLLCVEGPTDVAAFKSLSRALHLTDPTLPNLASDDRVAFVLLGGSTLKHWVTQHYLRSLNR PEVHIYDSDVAKYAESVAEVNLRTDGSWAVQTNKHEIECYLHADAIKDAFGVEIVVVDQPGADGKSVPKIFAEAFSAKQQ YDGVMGDEKAKLRLADKAFPMMTAERLAERDPAREVEGWFRRLGAML
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66871; Mature: 66871
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIFFNNETVKIEQGDAN CCCCCCCCCCEEEEHHHCCEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC IYSGAPLVSITCEFSDLPSQLSLDAGAETTLAAEYLLSTRGTLKIQKVFDCSKKTPSAEV EECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCCCCCCCCCEE YILANHPTATGVADLLDLKEKDLQKLVKDQKLDAALKGNPGMRRALWAAAKDLELQEVAL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCHHHHCC PVTKPKEDSKRIWDQLENYLPMYALFQSDRSSRDSDGEVQNPMRAAVAAAIAEVQDDINR CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IQEKVREKAELIAKITHEALKTIDPNLAKELTPQFMPPTAAKWTGLFSVGMDTDDGIPLN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHCEEEEECCCCCCCCCCC KRGSGVRRLVLVAFFKAEAERRLKAGTSRSIIYAIEEPETAQHPNNQRILIESFKTLALE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHEEC PGCQVLLTTHSPGFASDLPTASIRFVTRDAALQPVILEGADVFGQVAETLGVVPDSRVKV CCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEE LLCVEGPTDVAAFKSLSRALHLTDPTLPNLASDDRVAFVLLGGSTLKHWVTQHYLRSLNR EEEECCCCHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC PEVHIYDSDVAKYAESVAEVNLRTDGSWAVQTNKHEIECYLHADAIKDAFGVEIVVVDQP CEEEEECCHHHHHHHHHHHEEEECCCCEEEECCCEEEEEEEEHHHHHHHHCEEEEEEECC GADGKSVPKIFAEAFSAKQQYDGVMGDEKAKLRLADKAFPMMTAERLAERDPAREVEGWF CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHH RRLGAML HHHCCCC >Mature Secondary Structure MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIFFNNETVKIEQGDAN CCCCCCCCCCEEEEHHHCCEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC IYSGAPLVSITCEFSDLPSQLSLDAGAETTLAAEYLLSTRGTLKIQKVFDCSKKTPSAEV EECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCCCCCCCCCEE YILANHPTATGVADLLDLKEKDLQKLVKDQKLDAALKGNPGMRRALWAAAKDLELQEVAL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCHHHHCC PVTKPKEDSKRIWDQLENYLPMYALFQSDRSSRDSDGEVQNPMRAAVAAAIAEVQDDINR CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IQEKVREKAELIAKITHEALKTIDPNLAKELTPQFMPPTAAKWTGLFSVGMDTDDGIPLN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHCEEEEECCCCCCCCCCC KRGSGVRRLVLVAFFKAEAERRLKAGTSRSIIYAIEEPETAQHPNNQRILIESFKTLALE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHEEC PGCQVLLTTHSPGFASDLPTASIRFVTRDAALQPVILEGADVFGQVAETLGVVPDSRVKV CCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEE LLCVEGPTDVAAFKSLSRALHLTDPTLPNLASDDRVAFVLLGGSTLKHWVTQHYLRSLNR EEEECCCCHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC PEVHIYDSDVAKYAESVAEVNLRTDGSWAVQTNKHEIECYLHADAIKDAFGVEIVVVDQP CEEEEECCHHHHHHHHHHHEEEECCCCEEEECCCEEEEEEEEHHHHHHHHCEEEEEEECC GADGKSVPKIFAEAFSAKQQYDGVMGDEKAKLRLADKAFPMMTAERLAERDPAREVEGWF CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHH RRLGAML HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA