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The map label for this gene is ycfQ [H]

Identifier: 238028044

GI number: 238028044

Start: 2833649

End: 2834275

Strand: Reverse

Name: ycfQ [H]

Synonym: bglu_1g24940

Alternate gene names: 238028044

Gene position: 2834275-2833649 (Counterclockwise)

Preceding gene: 238028046

Following gene: 238028042

Centisome position: 72.55

GC content: 68.74

Gene sequence:

>627_bases
ATGGCCCGCCCACGCGAATTCGACGAGGACGCCGCGCTCGACGCCGCAATCGCGCAGTTCTGGTCGCATGGTTACGAATC
CACTTCGGTGCGCGAGCTGGCCGCGATGATGGGTATGACGGGCGCGAGCGTCTACAACGCGTTCGGCGACAAGCGCGCGC
TCTACGAGCGGGCCTTCGAGCGCTACGTTGCCCGCGGTTTTCGTGAGCGCGAGCATCGCTTCGAGACGCAATTGCCGCCG
CGCGATGCGATAGCCGCGTTGTTCGGCGAAATCATCCGCCTGAGCGTGCACGACCCGCAGCGGCGCGGCTGCCTGATCGT
CAACGCCTCGATGGAGCTGGCGCGGCACGACTACGGGTTTCGCGACGCGCTCGAAACCACTCTGAAGGACATCGAGTCTT
TCTTCCTGCGCTGCGTGAAGGCCGGGCAGGCCGACGGCACGATTCCGGCCGGACTCGTCGCCGGGGACGTCGCGAAGATG
CTGTTCACGATGCTGATAGGGCTGCGCGTGCTGGCGCGCGTGCGGCCGCAGCGTGCGCTGCTGGAAGGCGCCGTGCGCCC
CGCGCTCGCGGTGATCGGCGCCGCGTTGCCGCCGGCCAGGCCGCGTGTGCGACGCAGGGTGGCCTGA

Upstream 100 bases:

>100_bases
AGCGCGCTCGGCGCGGCGCGGGCATTCCAGAACGATTGCACTAAAATGCGATGTCCGGCGCAGGCTTGCCGCCGGGACGA
ATCCACGGAGGAATCAAGCG

Downstream 100 bases:

>100_bases
GCCTGCCGCGGTCGCGCTACCCGCGCAGCAGGCCTGCCCCAGCAGTACGCCGGCCGATCCCTTCCCCGGTTTTCATCGTT
CGCCCCGGATCCGCGCGGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MARPREFDEDAALDAAIAQFWSHGYESTSVRELAAMMGMTGASVYNAFGDKRALYERAFERYVARGFREREHRFETQLPP
RDAIAALFGEIIRLSVHDPQRRGCLIVNASMELARHDYGFRDALETTLKDIESFFLRCVKAGQADGTIPAGLVAGDVAKM
LFTMLIGLRVLARVRPQRALLEGAVRPALAVIGAALPPARPRVRRRVA

Sequences:

>Translated_208_residues
MARPREFDEDAALDAAIAQFWSHGYESTSVRELAAMMGMTGASVYNAFGDKRALYERAFERYVARGFREREHRFETQLPP
RDAIAALFGEIIRLSVHDPQRRGCLIVNASMELARHDYGFRDALETTLKDIESFFLRCVKAGQADGTIPAGLVAGDVAKM
LFTMLIGLRVLARVRPQRALLEGAVRPALAVIGAALPPARPRVRRRVA
>Mature_207_residues
ARPREFDEDAALDAAIAQFWSHGYESTSVRELAAMMGMTGASVYNAFGDKRALYERAFERYVARGFREREHRFETQLPPR
DAIAALFGEIIRLSVHDPQRRGCLIVNASMELARHDYGFRDALETTLKDIESFFLRCVKAGQADGTIPAGLVAGDVAKML
FTMLIGLRVLARVRPQRALLEGAVRPALAVIGAALPPARPRVRRRVA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=172, Percent_Identity=28.4883720930233, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23144; Mature: 23013

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPREFDEDAALDAAIAQFWSHGYESTSVRELAAMMGMTGASVYNAFGDKRALYERAFE
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RYVARGFREREHRFETQLPPRDAIAALFGEIIRLSVHDPQRRGCLIVNASMELARHDYGF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCH
RDALETTLKDIESFFLRCVKAGQADGTIPAGLVAGDVAKMLFTMLIGLRVLARVRPQRAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LEGAVRPALAVIGAALPPARPRVRRRVA
HHHHHHHHHHHHHHCCCCCCHHHHHCCC
>Mature Secondary Structure 
ARPREFDEDAALDAAIAQFWSHGYESTSVRELAAMMGMTGASVYNAFGDKRALYERAFE
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RYVARGFREREHRFETQLPPRDAIAALFGEIIRLSVHDPQRRGCLIVNASMELARHDYGF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCH
RDALETTLKDIESFFLRCVKAGQADGTIPAGLVAGDVAKMLFTMLIGLRVLARVRPQRAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LEGAVRPALAVIGAALPPARPRVRRRVA
HHHHHHHHHHHHHHCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]