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The map label for this gene is nifU [H]

Identifier: 238028019

GI number: 238028019

Start: 2803567

End: 2803974

Strand: Reverse

Name: nifU [H]

Synonym: bglu_1g24690

Alternate gene names: 238028019

Gene position: 2803974-2803567 (Counterclockwise)

Preceding gene: 238028020

Following gene: 238028018

Centisome position: 71.78

GC content: 64.95

Gene sequence:

>408_bases
ATGTCTTACAGCAACAAGGTTCTGGATCACTACGAAAACCCGCGCAACGTCGGTTCGTTCTCGAAGGGCGACGACGCGGT
CGGCACCGGCATGGTCGGCGCGCCGGCCTGCGGCGACGTGATGAAGCTGCAGATCCGCGTCGGCACCGACGGCGTGATCG
AGGACGCGAAGTTCAAGACCTATGGCTGCGGTTCGGCGATCGCCTCAAGCTCGCTCGTCACCGAGTGGGTGAAGGGCAAG
ACGCTCGACGAGGCGCTGGCCATCAAGAACACGCAGATCGCCGAGGAACTGGCGCTGCCGCCCGTGAAGATCCACTGCTC
GATCCTGGCCGAGGACGCCATCAAGGCGGCCGTTGCCGACTATCGCAAGCGTCACGACGCGACGGCGGAAGACGGCCAGG
CGGCCTGA

Upstream 100 bases:

>100_bases
CACAAGGACGGCATCGACCTCTCGACGATCGAGTGGGCCGCACACTGAATGAAGGTTGCGCGGCCCGGCGCCGCGTACAC
GTAACGCACAGGAGTCGAAC

Downstream 100 bases:

>100_bases
GTCCCGCCAGCAGGTGCGGTGCACCGCCGGCAGGGCCGGGGGTGAGGTTTATCGAGGAAGACGCACGCGTGCGACGCGTG
CGACCAGGAACATCATGGCA

Product: FeS cluster assembly scaffold IscU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSYSNKVLDHYENPRNVGSFSKGDDAVGTGMVGAPACGDVMKLQIRVGTDGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDEALAIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYRKRHDATAEDGQAA

Sequences:

>Translated_135_residues
MSYSNKVLDHYENPRNVGSFSKGDDAVGTGMVGAPACGDVMKLQIRVGTDGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDEALAIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYRKRHDATAEDGQAA
>Mature_134_residues
SYSNKVLDHYENPRNVGSFSKGDDAVGTGMVGAPACGDVMKLQIRVGTDGVIEDAKFKTYGCGSAIASSSLVTEWVKGKT
LDEALAIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYRKRHDATAEDGQAA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=73.3870967741936, Blast_Score=195, Evalue=1e-50,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=72.5806451612903, Blast_Score=192, Evalue=6e-50,
Organism=Escherichia coli, GI1788878, Length=127, Percent_Identity=80.3149606299213, Blast_Score=220, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17543474, Length=127, Percent_Identity=69.2913385826772, Blast_Score=189, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=127, Percent_Identity=66.1417322834646, Blast_Score=179, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=67.2, Blast_Score=179, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21355597, Length=120, Percent_Identity=74.1666666666667, Blast_Score=191, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14256; Mature: 14125

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSNKVLDHYENPRNVGSFSKGDDAVGTGMVGAPACGDVMKLQIRVGTDGVIEDAKFKT
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDEALAIKNTQIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YRKRHDATAEDGQAA
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
SYSNKVLDHYENPRNVGSFSKGDDAVGTGMVGAPACGDVMKLQIRVGTDGVIEDAKFKT
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDEALAIKNTQIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YRKRHDATAEDGQAA
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]