| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027981
Identifier: 238027981
GI number: 238027981
Start: 2757954
End: 2760143
Strand: Direct
Name: 238027981
Synonym: bglu_1g24300
Alternate gene names: NA
Gene position: 2757954-2760143 (Clockwise)
Preceding gene: 238027979
Following gene: 238027984
Centisome position: 70.6
GC content: 69.22
Gene sequence:
>2190_bases ATGATGTCCGCATTTTCCCGATCCACCCTGCGCCGCGTGTCCCTGGCGCTGGCCGCGCTGACGCTCGTCGCGTCGATGTC GGCCAACGCTCAGGTCGTGCAAGGCACGGGGGCCACCGCCGATGCGACGTCCATCGCGATCGGCGACAACTCGACCGCGA GCAACACCAGCGCCGCAGTCGGGACCAACAGCACGGCCACGGGGATCGACAGCACCGCCATTGGACCCCTCTCGAAAGCA ACCGGACAGAACAGCACCGCCATCGGCTACCAGGCGAACGCCTCGGCCTCGGGCGCCTACGCCATCGGCTATGGTGCAAC GTCGAGCGGGGTGAGCGCCTACGCGATCGGCTCGGGCGCAAGCTCCACGGGGTCGAACGCCTACGCGATCGGCACGAACA GCCTCTCCTCCGGTGACTACGGGCTGTCCTTCGGGATGGGGGCCAACGTCGTTGCCGCCGCCGCCAACGGTATCGCGATG GGTCAGTCGGCCGGCGTCTACACCGCTGGGAGCATCGCTATCGGCGCGACCTCGATGGTGTTTGGCACGGACGGCGTTGC GCTGGGTTACAACGCGATGGCCAACGGTGCCTACGGCGTTGCGCTGGGCTATCAGGCCAACGCCTCGCAGCCGAACAGCG TGGCCCTGGGCAACGGCTCGACGACCTACTCCGTGACCGGCACCTCCGGGATGACGATCCGGGGAACCGGGTACACCTTC GCAGGCGCCACGCCGACCGGCACCGTCAGCGTGGGGACCGTGGGCGGTGAGCGCACGATCACCAACGTGGCCGCCGGCCA GGTGAACGCCAACAGCACCGACGCGGTGAACGGCTCGCAGCTCTACGCCGCCACCCAGGCGATCGAAGCGCTGACCAGCG GGACCAGCCTGGTGGCCCAGCCGAGCGGTACGAGCGGCACCATCACGGTGGGCGCATCGGCCGGTGGCACGGCCGTGGAC GTGACCGGGACCAGCGGTGCGCGCACCCTCACGGGCGTGGCCGCCGGCAGCGTGTCCGCCGCCAGCACCGACGCGGTGAA CGGTTCGCAGCTCAACGCGACGAACCAGACCGTGTCGTCGCTGAGCACCCAGGTGTCGACCAACACCACCAACATCGCGT CGAACACGTCGTCGATCAACGCGATCAACTCGGGCCTGAGCAACGGCACCGTGGGTCTCGTGCAGCAGACCTTCGGCTCG CCGGGCAACGGTTCGATCACGGTGGGCGCGTCGACCGGCGGTACCTCGGTGGACTTCACCGGGACCAGCGGTGCGCGCAC CCTCACCGGGGTGGCCGCCGGCACGGGCAGCACCGACGCGGTGAACGTGGGTCAGCTCACCGCCGCGCTCGCCAACGTGA CCAGCGCCACCTCCAACGCGGTGTCGTACGACAGCTCCGCGAAGACCAGCGTGACGCTGGGCGGGGTCGGGGCCACCACG CCGGTGATCTTCACCAACGTGGCCCCCGGTGCGCTCACCGCCACCAGCACGAACGCGGTCAACGGTTCGCAGCTCTTCGC GACCAACCAGGCCGTGTCCTCGCTGGGCACCCGGGTCACCGCGCTGGAAGCCGCCGAAGGCACGTCCTCGGGGGTGTCCG CCGCCTACGTGCAGCAGCAGGTCGCTGCGGCCGTGTCCTCGGCGAACACCTACACCGACCAGCAGTCCGCCGCTGCGGTG ACGTCGGCCAACGGGTACACCGACCAGGCGATCGCCAAGATCCCGACCACCGGTTCCGGTTCGGGGGATGCGACGACGGT CCTGCAGTCCGCGAACACCTACACGGACCAGCAGACCGCCCAGACCCTGTCGCAGTCGAAGACCTACACCGACCAGCAGG CCGCTCAGACGCTGTCCCAGTCGAAGAGCTACACCGATCAGCAGGTCGGCGCCCTCTCGAACAGCGTGGACCAGCGGTTC GACGCGGTGAACCGGGGGATGAACGACCTGAGCAACCGCATCGACGGTGTGGGAGCCATGTCCGCTGCGGCTGGGTCCGC GATGTACAACCCGGACAGCGCCCACGACACCCAGGCGGCCATCGGGGTGGCGAACTTCCGCGGCCAGTTCGGCTACTCGG TGAAGGTGTTCCACCGGTTCGGCCCGAACGCCGTGGTGAACCTGAACGTCGGGGGCGCCACCGGTGCGGCCGGCGTCGCG GTTGGCGGTGGGATCAACATCGGTTTCTGA
Upstream 100 bases:
>100_bases CGCATCGTCGTCCGGTAATCCCGGCCTGACCACCCGATCGCTGCACCTCGTTTCACCTGCTGTCCGTCGTTCCAACCACC AACCTTGAGGAGACCTACGC
Downstream 100 bases:
>100_bases CCCACGGTCCGACGTCGAGCACAACGCCCACTCCGGTGGGCGTTTTCCCGTGCCAGGGCACGGGTTGACAGCCCTGGTAA TGCTGCTAGATGTGGATCAC
Product: Surface-exposed protein
Products: NA
Alternate protein names: Autotransporter Adhesin; Haemagglutinin-Related Autotransporter Protein; YadA C-Terminal Domain Protein; Haemagglutinin Family Protein; Outer Membrane Protein; Haemagluttinin Domain Protein; Haemagglutinin; Surface-Exposed Protein; Hemagglutinin Family Protein; Hemagglutinin Superfamily; Membrane-Anchored Cell Surface Protein Haemagluttinin; Outer Membrane Pathogenesis Protein; Adhesin; YadA-Like C-Terminal Domain-Containing; Hemagluttinin Domain-Containing Protein; YadA Domain Protein; S-Layer-Like Domain Protein; Hemagluttinin/Autotransporter Adhesin
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MMSAFSRSTLRRVSLALAALTLVASMSANAQVVQGTGATADATSIAIGDNSTASNTSAAVGTNSTATGIDSTAIGPLSKA TGQNSTAIGYQANASASGAYAIGYGATSSGVSAYAIGSGASSTGSNAYAIGTNSLSSGDYGLSFGMGANVVAAAANGIAM GQSAGVYTAGSIAIGATSMVFGTDGVALGYNAMANGAYGVALGYQANASQPNSVALGNGSTTYSVTGTSGMTIRGTGYTF AGATPTGTVSVGTVGGERTITNVAAGQVNANSTDAVNGSQLYAATQAIEALTSGTSLVAQPSGTSGTITVGASAGGTAVD VTGTSGARTLTGVAAGSVSAASTDAVNGSQLNATNQTVSSLSTQVSTNTTNIASNTSSINAINSGLSNGTVGLVQQTFGS PGNGSITVGASTGGTSVDFTGTSGARTLTGVAAGTGSTDAVNVGQLTAALANVTSATSNAVSYDSSAKTSVTLGGVGATT PVIFTNVAPGALTATSTNAVNGSQLFATNQAVSSLGTRVTALEAAEGTSSGVSAAYVQQQVAAAVSSANTYTDQQSAAAV TSANGYTDQAIAKIPTTGSGSGDATTVLQSANTYTDQQTAQTLSQSKTYTDQQAAQTLSQSKSYTDQQVGALSNSVDQRF DAVNRGMNDLSNRIDGVGAMSAAAGSAMYNPDSAHDTQAAIGVANFRGQFGYSVKVFHRFGPNAVVNLNVGGATGAAGVA VGGGINIGF
Sequences:
>Translated_729_residues MMSAFSRSTLRRVSLALAALTLVASMSANAQVVQGTGATADATSIAIGDNSTASNTSAAVGTNSTATGIDSTAIGPLSKA TGQNSTAIGYQANASASGAYAIGYGATSSGVSAYAIGSGASSTGSNAYAIGTNSLSSGDYGLSFGMGANVVAAAANGIAM GQSAGVYTAGSIAIGATSMVFGTDGVALGYNAMANGAYGVALGYQANASQPNSVALGNGSTTYSVTGTSGMTIRGTGYTF AGATPTGTVSVGTVGGERTITNVAAGQVNANSTDAVNGSQLYAATQAIEALTSGTSLVAQPSGTSGTITVGASAGGTAVD VTGTSGARTLTGVAAGSVSAASTDAVNGSQLNATNQTVSSLSTQVSTNTTNIASNTSSINAINSGLSNGTVGLVQQTFGS PGNGSITVGASTGGTSVDFTGTSGARTLTGVAAGTGSTDAVNVGQLTAALANVTSATSNAVSYDSSAKTSVTLGGVGATT PVIFTNVAPGALTATSTNAVNGSQLFATNQAVSSLGTRVTALEAAEGTSSGVSAAYVQQQVAAAVSSANTYTDQQSAAAV TSANGYTDQAIAKIPTTGSGSGDATTVLQSANTYTDQQTAQTLSQSKTYTDQQAAQTLSQSKSYTDQQVGALSNSVDQRF DAVNRGMNDLSNRIDGVGAMSAAAGSAMYNPDSAHDTQAAIGVANFRGQFGYSVKVFHRFGPNAVVNLNVGGATGAAGVA VGGGINIGF >Mature_729_residues MMSAFSRSTLRRVSLALAALTLVASMSANAQVVQGTGATADATSIAIGDNSTASNTSAAVGTNSTATGIDSTAIGPLSKA TGQNSTAIGYQANASASGAYAIGYGATSSGVSAYAIGSGASSTGSNAYAIGTNSLSSGDYGLSFGMGANVVAAAANGIAM GQSAGVYTAGSIAIGATSMVFGTDGVALGYNAMANGAYGVALGYQANASQPNSVALGNGSTTYSVTGTSGMTIRGTGYTF AGATPTGTVSVGTVGGERTITNVAAGQVNANSTDAVNGSQLYAATQAIEALTSGTSLVAQPSGTSGTITVGASAGGTAVD VTGTSGARTLTGVAAGSVSAASTDAVNGSQLNATNQTVSSLSTQVSTNTTNIASNTSSINAINSGLSNGTVGLVQQTFGS PGNGSITVGASTGGTSVDFTGTSGARTLTGVAAGTGSTDAVNVGQLTAALANVTSATSNAVSYDSSAKTSVTLGGVGATT PVIFTNVAPGALTATSTNAVNGSQLFATNQAVSSLGTRVTALEAAEGTSSGVSAAYVQQQVAAAVSSANTYTDQQSAAAV TSANGYTDQAIAKIPTTGSGSGDATTVLQSANTYTDQQTAQTLSQSKTYTDQQAAQTLSQSKSYTDQQVGALSNSVDQRF DAVNRGMNDLSNRIDGVGAMSAAAGSAMYNPDSAHDTQAAIGVANFRGQFGYSVKVFHRFGPNAVVNLNVGGATGAAGVA VGGGINIGF
Specific function: Unknown
COG id: COG5295
COG function: function code UW; Autotransporter adhesin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70271; Mature: 70271
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSAFSRSTLRRVSLALAALTLVASMSANAQVVQGTGATADATSIAIGDNSTASNTSAAV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEEC GTNSTATGIDSTAIGPLSKATGQNSTAIGYQANASASGAYAIGYGATSSGVSAYAIGSGA CCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEECCCC SSTGSNAYAIGTNSLSSGDYGLSFGMGANVVAAAANGIAMGQSAGVYTAGSIAIGATSMV CCCCCCEEEEECCCCCCCCCCEEECCCCCEEEECCCCEEECCCCCEEEECCEEECCEEEE FGTDGVALGYNAMANGAYGVALGYQANASQPNSVALGNGSTTYSVTGTSGMTIRGTGYTF ECCCCEEECCHHHCCCCEEEEEEEECCCCCCCEEEECCCCEEEEEECCCCEEEEECCEEE AGATPTGTVSVGTVGGERTITNVAAGQVNANSTDAVNGSQLYAATQAIEALTSGTSLVAQ ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC PSGTSGTITVGASAGGTAVDVTGTSGARTLTGVAAGSVSAASTDAVNGSQLNATNQTVSS CCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEECCHHHHHHH LSTQVSTNTTNIASNTSSINAINSGLSNGTVGLVQQTFGSPGNGSITVGASTGGTSVDFT HHHEECCCCCEECCCCCHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEECCCCCCEEEEC GTSGARTLTGVAAGTGSTDAVNVGQLTAALANVTSATSNAVSYDSSAKTSVTLGGVGATT CCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCEECCCCCCCEEEECCCCCCC PVIFTNVAPGALTATSTNAVNGSQLFATNQAVSSLGTRVTALEAAEGTSSGVSAAYVQQQ CEEEECCCCCCEEECCCCCCCCCEEEEHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH VAAAVSSANTYTDQQSAAAVTSANGYTDQAIAKIPTTGSGSGDATTVLQSANTYTDQQTA HHHHHHCCCCCCCCHHHHEEECCCCCCCCHHEECCCCCCCCCCHHHEECCCCCCCHHHHH QTLSQSKTYTDQQAAQTLSQSKSYTDQQVGALSNSVDQRFDAVNRGMNDLSNRIDGVGAM HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHH SAAAGSAMYNPDSAHDTQAAIGVANFRGQFGYSVKVFHRFGPNAVVNLNVGGATGAAGVA HHHCCCCCCCCCCCCCCHHHEEEHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCEE VGGGINIGF ECCCEECCC >Mature Secondary Structure MMSAFSRSTLRRVSLALAALTLVASMSANAQVVQGTGATADATSIAIGDNSTASNTSAAV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEEC GTNSTATGIDSTAIGPLSKATGQNSTAIGYQANASASGAYAIGYGATSSGVSAYAIGSGA CCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEECCCC SSTGSNAYAIGTNSLSSGDYGLSFGMGANVVAAAANGIAMGQSAGVYTAGSIAIGATSMV CCCCCCEEEEECCCCCCCCCCEEECCCCCEEEECCCCEEECCCCCEEEECCEEECCEEEE FGTDGVALGYNAMANGAYGVALGYQANASQPNSVALGNGSTTYSVTGTSGMTIRGTGYTF ECCCCEEECCHHHCCCCEEEEEEEECCCCCCCEEEECCCCEEEEEECCCCEEEEECCEEE AGATPTGTVSVGTVGGERTITNVAAGQVNANSTDAVNGSQLYAATQAIEALTSGTSLVAQ ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC PSGTSGTITVGASAGGTAVDVTGTSGARTLTGVAAGSVSAASTDAVNGSQLNATNQTVSS CCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEECCHHHHHHH LSTQVSTNTTNIASNTSSINAINSGLSNGTVGLVQQTFGSPGNGSITVGASTGGTSVDFT HHHEECCCCCEECCCCCHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEECCCCCCEEEEC GTSGARTLTGVAAGTGSTDAVNVGQLTAALANVTSATSNAVSYDSSAKTSVTLGGVGATT CCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCEECCCCCCCEEEECCCCCCC PVIFTNVAPGALTATSTNAVNGSQLFATNQAVSSLGTRVTALEAAEGTSSGVSAAYVQQQ CEEEECCCCCCEEECCCCCCCCCEEEEHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH VAAAVSSANTYTDQQSAAAVTSANGYTDQAIAKIPTTGSGSGDATTVLQSANTYTDQQTA HHHHHHCCCCCCCCHHHHEEECCCCCCCCHHEECCCCCCCCCCHHHEECCCCCCCHHHHH QTLSQSKTYTDQQAAQTLSQSKSYTDQQVGALSNSVDQRFDAVNRGMNDLSNRIDGVGAM HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHH SAAAGSAMYNPDSAHDTQAAIGVANFRGQFGYSVKVFHRFGPNAVVNLNVGGATGAAGVA HHHCCCCCCCCCCCCCCHHHEEEHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCEE VGGGINIGF ECCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA