Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 238027878

GI number: 238027878

Start: 2540808

End: 2541200

Strand: Reverse

Name: tdcF [C]

Synonym: bglu_1g23110

Alternate gene names: 238027878

Gene position: 2541200-2540808 (Counterclockwise)

Preceding gene: 238027879

Following gene: 238027872

Centisome position: 65.05

GC content: 69.72

Gene sequence:

>393_bases
ATGAAACGCTATGTGACCTCGGGCGAGGGCCTGCCGCAATGGCCGTCACCCATCAGCCACGCGGTCGTCGTGAACGGCAC
CTGCTATCTGAGCGGGCAGTTGTCGCTCGACGCCGATGGCCGCTACCTGCCCGGCACGCCGGCCGACGAGGCGCGGCGCG
CGTTCGACAACCTGTTCCGCGCGCTCGCCGCGGCCGGCTTCGAGCGGCACGACCTGGTGTTCGTCGACATCGCGTTCACG
GATATCGGCGCGCTGCCCGACGTGAACGCCGTGTATGCGGAACTGTTCGACGCGCAACGCCGTCCGGCGCGTACCGTCTA
CCAGGCCGCCGCGTTGCCGTTCGGCGGGCAGGTGAAGGTGATGGGCGTGGCGGTGAGGGACACGGCGCCGTGA

Upstream 100 bases:

>100_bases
CGTCAAGCACTACCTCTGACCCGGCATCGGCACGGCGCATCCGATCGAGCCGATCCACGCGGCGCGCCGGCAGGGCGCCG
CATCCTTCCAGGAGATTTCC

Downstream 100 bases:

>100_bases
CGCGCGAGGCCGCCGCGTTCAGCGCGCGAGCGGCCGTTCGACGATGGAGCCCGACAGGGCGCCGAGCAGCGCGATGAGCT
GCCGCTGCTCCGCGTCGGAC

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRYVTSGEGLPQWPSPISHAVVVNGTCYLSGQLSLDADGRYLPGTPADEARRAFDNLFRALAAAGFERHDLVFVDIAFT
DIGALPDVNAVYAELFDAQRRPARTVYQAAALPFGGQVKVMGVAVRDTAP

Sequences:

>Translated_130_residues
MKRYVTSGEGLPQWPSPISHAVVVNGTCYLSGQLSLDADGRYLPGTPADEARRAFDNLFRALAAAGFERHDLVFVDIAFT
DIGALPDVNAVYAELFDAQRRPARTVYQAAALPFGGQVKVMGVAVRDTAP
>Mature_130_residues
MKRYVTSGEGLPQWPSPISHAVVVNGTCYLSGQLSLDADGRYLPGTPADEARRAFDNLFRALAAAGFERHDLVFVDIAFT
DIGALPDVNAVYAELFDAQRRPARTVYQAAALPFGGQVKVMGVAVRDTAP

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=36, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=34.9593495934959, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=34.9593495934959, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=34.4, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=32.6732673267327, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13997; Mature: 13997

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYVTSGEGLPQWPSPISHAVVVNGTCYLSGQLSLDADGRYLPGTPADEARRAFDNLFR
CCCCCCCCCCCCCCCCCCCCEEEECCEEEEECEEEECCCCCCCCCCCHHHHHHHHHHHHH
ALAAAGFERHDLVFVDIAFTDIGALPDVNAVYAELFDAQRRPARTVYQAAALPFGGQVKV
HHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEE
MGVAVRDTAP
EEEEECCCCC
>Mature Secondary Structure
MKRYVTSGEGLPQWPSPISHAVVVNGTCYLSGQLSLDADGRYLPGTPADEARRAFDNLFR
CCCCCCCCCCCCCCCCCCCCEEEECCEEEEECEEEECCCCCCCCCCCHHHHHHHHHHHHH
ALAAAGFERHDLVFVDIAFTDIGALPDVNAVYAELFDAQRRPARTVYQAAALPFGGQVKV
HHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEE
MGVAVRDTAP
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA