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The map label for this gene is rbsC [H]

Identifier: 238027822

GI number: 238027822

Start: 2457518

End: 2458570

Strand: Direct

Name: rbsC [H]

Synonym: bglu_1g22530

Alternate gene names: 238027822

Gene position: 2457518-2458570 (Clockwise)

Preceding gene: 238027821

Following gene: 238027823

Centisome position: 62.91

GC content: 74.26

Gene sequence:

>1053_bases
ATGAGCAAGGTGCTCGACGCCCGGCCCGCTGCGGCCCGTGAGAGCTCGCCCGCCTCGCCGCGCCCAGCCCGGCGCCTGCC
GCTGCCCGGCCCGCAATGGTGGCTGCGCAGCGGCGCGGCGCTTGCCTTCGCGGCCGTGCTGGCGGGGTTCGCGCTCAGTT
CGCCGCTATTCCTCACGCTCGCCAATCTCGCCAACGTGGTCCAGCAATCCGCGGTAGTGGGCCTGCTCGGCTTCGGCCTG
ACGGCGGTGCTGATCGGCGGCGGTGCCGACCCGATCCGCGGCGGCCTCGACCTGTCGGTGGCCGCCAACCTCGGTTTCTG
CGCCGCGGTGTACGCCGTCGCGCTGCGCGCCGGCCTCTCGCCCGGCCTGGCGCTCGCGCTGGTGCTGGCGGCCGGCGCGG
CGATCGGCGCACTCAATGCCTTCGCCGTGATCGTGCTGCGCATCTACCCGCTGCTCGCCACGCTGACCACCATGAACCTG
TGCGCCGGCTTCGAGCTGGTGCTCACCCAGAACACCTCGGTGCCGGCCAGCTCGCCGCTGCTCACCGCCCTGCTCGGCGA
CGCCGTGGCCGGCGTGCCCACCCTCGCGCTCGCCCTGCTGGCGGCGGCCGCCGTGTTCACCGTGCTGCTTCATCGCACGC
CTTTCGGGCTGCGCCTGCACGCGGTGGGCGCGCACCCCGAGGCGGCCCGCGCGGCCGGCCTGCGCGTGAACCGCGCGATC
GCGGCCAGCTACGTGCTGAGCGGGCTGGCGGCGGCGCTCGCCGCCCTCGCCAACCTCGCCCTGCTGAGCGGCAGCTCGCC
CGGCGCCGGCGACAACCTGCTGACCGTGGTGGCCGCCGCCCTGCTCGGCGTGGTGTTCTCGCGCCGCCTGGTGCCGACCA
TTCCCGGCACGCTGCTGGCGGTGCTGTTCATCGGCGTGATCGGCAACGGCTTCCAGCTCGACAACGTGTCGAGCTACTGG
GTCAACGGCGTGGAAGGCCTGTTGATCCTGTTCGTGGTCGCGGCCACCGCGCTCGTGCGCCGCCGCCATGCCGGGAGCCG
CGCCCATGACTGA

Upstream 100 bases:

>100_bases
TCACGCGCGACACCGATCGCCACGAACTGCTCGCCTGGGCCACCGGCGCGCGCGGCAGCGACGCCTTCGCGCGCGGTCAG
ACACCGGCGGAGGCTGCCGC

Downstream 100 bases:

>100_bases
AGCCCGCCCGTCAGCCGTCGCGCGCCTCGGCTCGCCGCGGCGCTTCGCCCTGGTCGGTGCGCTGCTGGCCGTGATCCTGT
TGTTCGCCGTGTTCGTGCCC

Product: ABC transporter carbohydrate uptake transporter-2 family, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSKVLDARPAAARESSPASPRPARRLPLPGPQWWLRSGAALAFAAVLAGFALSSPLFLTLANLANVVQQSAVVGLLGFGL
TAVLIGGGADPIRGGLDLSVAANLGFCAAVYAVALRAGLSPGLALALVLAAGAAIGALNAFAVIVLRIYPLLATLTTMNL
CAGFELVLTQNTSVPASSPLLTALLGDAVAGVPTLALALLAAAAVFTVLLHRTPFGLRLHAVGAHPEAARAAGLRVNRAI
AASYVLSGLAAALAALANLALLSGSSPGAGDNLLTVVAAALLGVVFSRRLVPTIPGTLLAVLFIGVIGNGFQLDNVSSYW
VNGVEGLLILFVVAATALVRRRHAGSRAHD

Sequences:

>Translated_350_residues
MSKVLDARPAAARESSPASPRPARRLPLPGPQWWLRSGAALAFAAVLAGFALSSPLFLTLANLANVVQQSAVVGLLGFGL
TAVLIGGGADPIRGGLDLSVAANLGFCAAVYAVALRAGLSPGLALALVLAAGAAIGALNAFAVIVLRIYPLLATLTTMNL
CAGFELVLTQNTSVPASSPLLTALLGDAVAGVPTLALALLAAAAVFTVLLHRTPFGLRLHAVGAHPEAARAAGLRVNRAI
AASYVLSGLAAALAALANLALLSGSSPGAGDNLLTVVAAALLGVVFSRRLVPTIPGTLLAVLFIGVIGNGFQLDNVSSYW
VNGVEGLLILFVVAATALVRRRHAGSRAHD
>Mature_349_residues
SKVLDARPAAARESSPASPRPARRLPLPGPQWWLRSGAALAFAAVLAGFALSSPLFLTLANLANVVQQSAVVGLLGFGLT
AVLIGGGADPIRGGLDLSVAANLGFCAAVYAVALRAGLSPGLALALVLAAGAAIGALNAFAVIVLRIYPLLATLTTMNLC
AGFELVLTQNTSVPASSPLLTALLGDAVAGVPTLALALLAAAAVFTVLLHRTPFGLRLHAVGAHPEAARAAGLRVNRAIA
ASYVLSGLAAALAALANLALLSGSSPGAGDNLLTVVAAALLGVVFSRRLVPTIPGTLLAVLFIGVIGNGFQLDNVSSYWV
NGVEGLLILFVVAATALVRRRHAGSRAHD

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=30.4347826086957, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=32.5806451612903, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790524, Length=337, Percent_Identity=29.673590504451, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693152, Length=315, Percent_Identity=27.3015873015873, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082395, Length=303, Percent_Identity=27.7227722772277, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=28.4375, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=186, Percent_Identity=30.6451612903226, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=30.8270676691729, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35173; Mature: 35042

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVLDARPAAARESSPASPRPARRLPLPGPQWWLRSGAALAFAAVLAGFALSSPLFLTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHH
ANLANVVQQSAVVGLLGFGLTAVLIGGGADPIRGGLDLSVAANLGFCAAVYAVALRAGLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHCCC
PGLALALVLAAGAAIGALNAFAVIVLRIYPLLATLTTMNLCAGFELVLTQNTSVPASSPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHH
LTALLGDAVAGVPTLALALLAAAAVFTVLLHRTPFGLRLHAVGAHPEAARAAGLRVNRAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCHHHHHH
AASYVLSGLAAALAALANLALLSGSSPGAGDNLLTVVAAALLGVVFSRRLVPTIPGTLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VLFIGVIGNGFQLDNVSSYWVNGVEGLLILFVVAATALVRRRHAGSRAHD
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKVLDARPAAARESSPASPRPARRLPLPGPQWWLRSGAALAFAAVLAGFALSSPLFLTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHH
ANLANVVQQSAVVGLLGFGLTAVLIGGGADPIRGGLDLSVAANLGFCAAVYAVALRAGLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHCCC
PGLALALVLAAGAAIGALNAFAVIVLRIYPLLATLTTMNLCAGFELVLTQNTSVPASSPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHH
LTALLGDAVAGVPTLALALLAAAAVFTVLLHRTPFGLRLHAVGAHPEAARAAGLRVNRAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCHHHHHH
AASYVLSGLAAALAALANLALLSGSSPGAGDNLLTVVAAALLGVVFSRRLVPTIPGTLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VLFIGVIGNGFQLDNVSSYWVNGVEGLLILFVVAATALVRRRHAGSRAHD
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]