| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027771
Identifier: 238027771
GI number: 238027771
Start: 2391507
End: 2392967
Strand: Reverse
Name: 238027771
Synonym: bglu_1g21950
Alternate gene names: NA
Gene position: 2392967-2391507 (Counterclockwise)
Preceding gene: 238027772
Following gene: 238027770
Centisome position: 61.26
GC content: 76.04
Gene sequence:
>1461_bases GTGAGCGCCACGCGGTTCGCCGCCCGCCGCGCGATCGCGGCGGGCGGGCTGGTGCTGGCCGCCGTCGGCGCGGCCGGTGC CATCAGCGCGCGCGCCGCCGCGCGCGCGCCGGCCGCCGATGGCGGCCCGCCGGCGAGCCGCGCGAGCGGCGGCACGGCCC ACCCCCTCGCGACGGTGCCCTACCTGACCCGCGAGGGCGACACCCTCTACGAGATCTCGACGCGTTATCTGCAAGGCCCC GGCGACTGGCCCCTGGTGGCGCGCCTGAACGGCGTGCCGGCGCCGAAGCGGCTGCAGCGCGGCGTGGTGATCCGCCTGCC GGCCGCGCGGCTGCGCCGCGAGCGGCTGACCGTGCGCGTCGTCGCGCTGCATGGCGCGGTCGAGCGCGCCGGCCGCGACG GCGCGTTCGCCGCGCTCGGGGCCAAGGCCACGCTCGGCGAGGGCGACCGCCTGCGCACCGGCAGCGACGGCTTCGTCACG CTGGAGCTGAGCGACGGCACCCACCTGAGCCTGCCGCCCGACAGCCAGATCGACTTGACCGTGCTGCGCCGCACCGTGCT GACCGGCGTGCTCGAGCGCGAGTTCGAACTGCGGCGCGGCTCGGTGGACAGCGAGGTCACGCATCTGAAGCGGCCCGACG ACCGCTTCCAGATCCGCGCGCCGTCGGTGGTGGCCGGCGTGCGCGGCACGCGCTTTCGCGTCGGCTATGACGATGGCGAC GGCGACGGCGACGGCGACGGCGGGCAGGCGCTCACGCGCGTCGAGGTGCTCGACGGCGCGGTCGGCGTCGAGCCCGATGC GCCGCGCGCCGCCCGGCGCCGTGCCGCGGCTCCGGGCGCGACGCTGGTGCACGCGAATTTCGGCAGCGTGACGCGGGCCG GCGGGCAGGTGGGCGCCCCGGTGCCGCTGCTCGAGGCGCCGCGGCTCGCCAGGCCGGGCAAGCTGCAGGACGACGCGCAG GTCGACTTCGAGATCGTGCCGCTCGACGGCGCGCGGGCCTACCACGTCGAGCTCGCGAGCGACGCCGGCTTGCTCGACCT GTTGCGCGAGGTGCGGTCCGACACGCCGCGCGTGCGCTTCTCCGATCTGCCCGACGGCCGCTACTTCGTGCGCATCGCCG CGCTCGACGCGAACGGGCTCGAAGGGCAGGCGCGCGTGTACGGCTTCGAGCGGCGCCGCTTCGGACTGCGCACCGAGGCC GGCCCGGCCGGCGACGGCTACGCGTTCCGCTGGAATCCGAGCGGCGCGACGGCCGCCGTCACGCGCTACCGCTTCATCCT GTCCGCCTCGCGCGAGCTGGCCGATCCGATCGTCGATCAGCCGGGGTTGACCGACACGCGCCTCGTGATCGCGCATCTGC CGCCCGGGCGCTATTACTGGACCGTGATCGCCGAGCAGTTCGTCGACGGCCGCTTCTACGACAAGGCCGGCGCCGTCAAC AGTTTCACGCTCGCGCGCTGA
Upstream 100 bases:
>100_bases TGCGCACCAAGCTGGCGCTGCGGCCCGAGAACGGTTATCGCCTCGCGCCGATCTACGGCTACGGCTACCGGCTCGAACGG CTGCAGCAGGGAGCCGCCGA
Downstream 100 bases:
>100_bases GCCGGCCGATGAAGCCTGACACCGGCTCCCGGCGGCGCCCCCCCGGCCGGCGCTTTCTCCTCGAATGGCTCGCGATCGGC GTGCTCGGCGTGGCGGCCGT
Product: LysM domain-containing protein
Products: NA
Alternate protein names: LysM Domain-Containing Protein; LysM Cell Wall-Like Protein; LysM Domain-Containing; LysM Motif-Containing Protein; LysM Domain Protein
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MSATRFAARRAIAAGGLVLAAVGAAGAISARAAARAPAADGGPPASRASGGTAHPLATVPYLTREGDTLYEISTRYLQGP GDWPLVARLNGVPAPKRLQRGVVIRLPAARLRRERLTVRVVALHGAVERAGRDGAFAALGAKATLGEGDRLRTGSDGFVT LELSDGTHLSLPPDSQIDLTVLRRTVLTGVLEREFELRRGSVDSEVTHLKRPDDRFQIRAPSVVAGVRGTRFRVGYDDGD GDGDGDGGQALTRVEVLDGAVGVEPDAPRAARRRAAAPGATLVHANFGSVTRAGGQVGAPVPLLEAPRLARPGKLQDDAQ VDFEIVPLDGARAYHVELASDAGLLDLLREVRSDTPRVRFSDLPDGRYFVRIAALDANGLEGQARVYGFERRRFGLRTEA GPAGDGYAFRWNPSGATAAVTRYRFILSASRELADPIVDQPGLTDTRLVIAHLPPGRYYWTVIAEQFVDGRFYDKAGAVN SFTLAR
Sequences:
>Translated_486_residues MSATRFAARRAIAAGGLVLAAVGAAGAISARAAARAPAADGGPPASRASGGTAHPLATVPYLTREGDTLYEISTRYLQGP GDWPLVARLNGVPAPKRLQRGVVIRLPAARLRRERLTVRVVALHGAVERAGRDGAFAALGAKATLGEGDRLRTGSDGFVT LELSDGTHLSLPPDSQIDLTVLRRTVLTGVLEREFELRRGSVDSEVTHLKRPDDRFQIRAPSVVAGVRGTRFRVGYDDGD GDGDGDGGQALTRVEVLDGAVGVEPDAPRAARRRAAAPGATLVHANFGSVTRAGGQVGAPVPLLEAPRLARPGKLQDDAQ VDFEIVPLDGARAYHVELASDAGLLDLLREVRSDTPRVRFSDLPDGRYFVRIAALDANGLEGQARVYGFERRRFGLRTEA GPAGDGYAFRWNPSGATAAVTRYRFILSASRELADPIVDQPGLTDTRLVIAHLPPGRYYWTVIAEQFVDGRFYDKAGAVN SFTLAR >Mature_485_residues SATRFAARRAIAAGGLVLAAVGAAGAISARAAARAPAADGGPPASRASGGTAHPLATVPYLTREGDTLYEISTRYLQGPG DWPLVARLNGVPAPKRLQRGVVIRLPAARLRRERLTVRVVALHGAVERAGRDGAFAALGAKATLGEGDRLRTGSDGFVTL ELSDGTHLSLPPDSQIDLTVLRRTVLTGVLEREFELRRGSVDSEVTHLKRPDDRFQIRAPSVVAGVRGTRFRVGYDDGDG DGDGDGGQALTRVEVLDGAVGVEPDAPRAARRRAAAPGATLVHANFGSVTRAGGQVGAPVPLLEAPRLARPGKLQDDAQV DFEIVPLDGARAYHVELASDAGLLDLLREVRSDTPRVRFSDLPDGRYFVRIAALDANGLEGQARVYGFERRRFGLRTEAG PAGDGYAFRWNPSGATAAVTRYRFILSASRELADPIVDQPGLTDTRLVIAHLPPGRYYWTVIAEQFVDGRFYDKAGAVNS FTLAR
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51739; Mature: 51608
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATRFAARRAIAAGGLVLAAVGAAGAISARAAARAPAADGGPPASRASGGTAHPLATVP CCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECC YLTREGDTLYEISTRYLQGPGDWPLVARLNGVPAPKRLQRGVVIRLPAARLRRERLTVRV EEECCCCEEEEEEHHEECCCCCCCEEEEECCCCCHHHHHCCEEEEECHHHHHHHCEEEEE VALHGAVERAGRDGAFAALGAKATLGEGDRLRTGSDGFVTLELSDGTHLSLPPDSQIDLT EEEHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEECCCCEEECCCCCCCHHH VLRRTVLTGVLEREFELRRGSVDSEVTHLKRPDDRFQIRAPSVVAGVRGTRFRVGYDDGD HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCEEECCCCCEEEEECCCCC GDGDGDGGQALTRVEVLDGAVGVEPDAPRAARRRAAAPGATLVHANFGSVTRAGGQVGAP CCCCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC VPLLEAPRLARPGKLQDDAQVDFEIVPLDGARAYHVELASDAGLLDLLREVRSDTPRVRF CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEE SDLPDGRYFVRIAALDANGLEGQARVYGFERRRFGLRTEAGPAGDGYAFRWNPSGATAAV CCCCCCEEEEEEEEECCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEECCCCCHHHH TRYRFILSASRELADPIVDQPGLTDTRLVIAHLPPGRYYWTVIAEQFVDGRFYDKAGAVN HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHCCEEECCCCCCC SFTLAR CEEECC >Mature Secondary Structure SATRFAARRAIAAGGLVLAAVGAAGAISARAAARAPAADGGPPASRASGGTAHPLATVP CCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECC YLTREGDTLYEISTRYLQGPGDWPLVARLNGVPAPKRLQRGVVIRLPAARLRRERLTVRV EEECCCCEEEEEEHHEECCCCCCCEEEEECCCCCHHHHHCCEEEEECHHHHHHHCEEEEE VALHGAVERAGRDGAFAALGAKATLGEGDRLRTGSDGFVTLELSDGTHLSLPPDSQIDLT EEEHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEECCCCEEECCCCCCCHHH VLRRTVLTGVLEREFELRRGSVDSEVTHLKRPDDRFQIRAPSVVAGVRGTRFRVGYDDGD HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCEEECCCCCEEEEECCCCC GDGDGDGGQALTRVEVLDGAVGVEPDAPRAARRRAAAPGATLVHANFGSVTRAGGQVGAP CCCCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC VPLLEAPRLARPGKLQDDAQVDFEIVPLDGARAYHVELASDAGLLDLLREVRSDTPRVRF CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEE SDLPDGRYFVRIAALDANGLEGQARVYGFERRRFGLRTEAGPAGDGYAFRWNPSGATAAV CCCCCCEEEEEEEEECCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEECCCCCHHHH TRYRFILSASRELADPIVDQPGLTDTRLVIAHLPPGRYYWTVIAEQFVDGRFYDKAGAVN HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHCCEEECCCCCCC SFTLAR CEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA