| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is yycG [H]
Identifier: 238027770
GI number: 238027770
Start: 2389048
End: 2391498
Strand: Reverse
Name: yycG [H]
Synonym: bglu_1g21940
Alternate gene names: 238027770
Gene position: 2391498-2389048 (Counterclockwise)
Preceding gene: 238027771
Following gene: 238027769
Centisome position: 61.22
GC content: 74.75
Gene sequence:
>2451_bases ATGAAGCCTGACACCGGCTCCCGGCGGCGCCCCCCCGGCCGGCGCTTTCTCCTCGAATGGCTCGCGATCGGCGTGCTCGG CGTGGCGGCCGTGCTGGCCGGCGTGGCCTGGCAGGCCACCGCGAGCATCGACCGGCTGATCTACGACCATCTGCTCGCCG CGCGCCGCCTGGCGCCCGATCCGGCCATCGTGGTGGTCGAGATCGACAATCCGAGCCTGGAACGGCTCGGCCGCTGGCCC TGGCCGCGCAGCGTGCATGCGCAACTGCTCGAGCGGCTCGCCCAGGCGCGGCCCGCCGCCGTGGTCTACGACGTATTGTT TACCGAGGCCTCGCCCGACGACGCGCAACTGGCCGCCGCGCTCGCGCGCGTGCCGACCTGGCTGCCGGTGCTGCTGGGCC CCGAGAACGCCGCCGGCGCGCGCGCGCTGACGCTGCCGGTGCCGCCGCTCGCGGCGCGCGCGGCCGGCATGGGCCACATC AACTTCGAAGTCGATCCGGACGGCATCGTGCGCAGCGTCGCGCCGACCGAGAGCGACGGGCGGCGCGACTGGCCGCAGCT CATGCTGGCCGTGGCGCGCGGCATCACGCGTGCCGCGGCCCCGGCGGCGGGCGCGGCGTTGGCCGCGAGCGAGGCGGGGC CGAGCCGGCAGGGCGCGACGCCGGCGGGGGCCATGCCGCACGCCTCGCGGTTCGCCGCCTCGCTGCCCGGCGGCCGCTAC CTGATTCCGTTCAGCCGCGGCACACCCGCCTATTCGTCCTGCTCGCTCGCCGACGTGCTGGCCGGCAAGGTGCCGGACGC GGCGCTGCGCGGCAAGGTGATCGTGGTCGGCGTGACGGCGGCCGGACTCTACGACCGCTTCGCCACGCCGATCTCGGGCG AGTTCGGCCCGCTGCCGGGCGTCTACCTGCATGCCAACGTGCTCGACATGCTGCTGACGGGCCGCGCGATCTCGCCGGTC TCGCGCGGCTGGCTGTGCCTCGCCTCGCTGCCGCCGCTCGCGGCGCTGCTGGCGGGCATCCTGCTGCTGTCGCCGCGCCG CGCGCTGCTGCTCGCGCTGTCGGTGGCGGCGCTGTCGGTGGCGGGCAGCGCGGCGCTGTTGTACGGCGCGCGACTGTGGC TGACGCCGGCCCCGGCGATCCTCGGCCTGATCGTGGTCTATCCGACCTGGAACTGGCGGCGCCTCGACATGACCATGGCC TACCTGCGCGACGAGCTCGAGCGGCTCGCCGCCGAGCCGCACCTGCTGCCCGAGTCGCCGCGTGCGTCCGGCGCGCGCGC CGAGTTCGGCGGCGACCCGCTCGAGCGGCAGATGAACCTGATGGCGCAGGCCGCGCGGCGCGTGCAGGACATGAAGCGCT TCGTCTGGGACAGCCTCGACAGCGTGCCCGAGCCGATCTTCGTGACCGACGTGGCCGGCATCGTGCTGATCGCCAACCAC GCGGCCCGGCGCTATTGCGCGCGCCTGCGGGCGGCCTCGCCCGAGGGCCGCCCGCTGCCGGCCGCGCTCGGCGAGCTGGC ATTCGTCAAGAGCGTGGCCCATCCCGAGCGCGAGCCGGACCTGCGCGCCGCCTGGCCGGACGCGCTCGATCCGACGCGCG GCGAGGCGCCGGCGCTGCTCGCGAGCGGGCTCGAGGTGCGCGATGCCGACGGCCTCGACCATCTGCTGCGCTACGCGCCC TGTACCAACGCCGAGGGCCAGGCGATCGGCTGGATCGCCGGGCTGGTGGACGTGACCGCGCTGCATGCGGCCGAGCGGCA GCGCGAGGAGGCGCTGCATCTGCTGTCGCACGACATGCGCTCGCCGCAGGCCTCGATCCTCGCGCTGGTGCGCACCGAGC GGCAGCGCCGCGACGCCGGGCCGGCGCAGCGCGAGCTGCTGGCCCGCATCGAGCGGCACGCGCAGCGCGCGCTGACGCTC GCCGACGAGTTCGTGCAGCTCGCACGCGCCGAGTCGCAGACCTACCGGATCGACGTCGTGAACCTCGCGGACCTGCTGCT CGACGCCAGCGACGAGGTCTGGCCGCAGGCGCAGGCGAAGCGGATTCGCATCGACACGGCGCTCGGCGAGGCGCCGTGCT GGATCGGTGCGGAGCGCTCGCTGATGACGCGCGCGCTGGTGAACCTGCTGAGCAACGCGATCAAGTACAGTCCTGCCGAC ACGCTGGTCCGCTGCACGCTGGCATTCACGGAGGCGCCGCCGCGCGTGACCTGCACGATCCGCGACCAGGGCTACGGGAT CGCGCCCGAGCACCAGCGGCACCTGTTCGAGCGCTTCCGCCGCTTTCACGCGGGCGAGCGGCCCGAAATCGCCGGCACCG GGCTCGGGATGGTGTTCGTGAAGACGGTGGTGACGCGGCACGGCGGCGGCATCGCGGTGGACAGCGCGCCGGGGCGAGGC ACCGCGATCGCGATCACGCTGCCGCGGCTCACCGACGTGGCGGATCCATGA
Upstream 100 bases:
>100_bases GCTATTACTGGACCGTGATCGCCGAGCAGTTCGTCGACGGCCGCTTCTACGACAAGGCCGGCGCCGTCAACAGTTTCACG CTCGCGCGCTGAGCCGGCCG
Downstream 100 bases:
>100_bases CGATCGGCAGCGCAGCGCAGCGCAGCGCCGCGGCGCGCGCCGACACTGAACCGGCCGCCCGGCGGCCAGCCAGGAGAGAG CAATGAAGACGAGATGGGCA
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MKPDTGSRRRPPGRRFLLEWLAIGVLGVAAVLAGVAWQATASIDRLIYDHLLAARRLAPDPAIVVVEIDNPSLERLGRWP WPRSVHAQLLERLAQARPAAVVYDVLFTEASPDDAQLAAALARVPTWLPVLLGPENAAGARALTLPVPPLAARAAGMGHI NFEVDPDGIVRSVAPTESDGRRDWPQLMLAVARGITRAAAPAAGAALAASEAGPSRQGATPAGAMPHASRFAASLPGGRY LIPFSRGTPAYSSCSLADVLAGKVPDAALRGKVIVVGVTAAGLYDRFATPISGEFGPLPGVYLHANVLDMLLTGRAISPV SRGWLCLASLPPLAALLAGILLLSPRRALLLALSVAALSVAGSAALLYGARLWLTPAPAILGLIVVYPTWNWRRLDMTMA YLRDELERLAAEPHLLPESPRASGARAEFGGDPLERQMNLMAQAARRVQDMKRFVWDSLDSVPEPIFVTDVAGIVLIANH AARRYCARLRAASPEGRPLPAALGELAFVKSVAHPEREPDLRAAWPDALDPTRGEAPALLASGLEVRDADGLDHLLRYAP CTNAEGQAIGWIAGLVDVTALHAAERQREEALHLLSHDMRSPQASILALVRTERQRRDAGPAQRELLARIERHAQRALTL ADEFVQLARAESQTYRIDVVNLADLLLDASDEVWPQAQAKRIRIDTALGEAPCWIGAERSLMTRALVNLLSNAIKYSPAD TLVRCTLAFTEAPPRVTCTIRDQGYGIAPEHQRHLFERFRRFHAGERPEIAGTGLGMVFVKTVVTRHGGGIAVDSAPGRG TAIAITLPRLTDVADP
Sequences:
>Translated_816_residues MKPDTGSRRRPPGRRFLLEWLAIGVLGVAAVLAGVAWQATASIDRLIYDHLLAARRLAPDPAIVVVEIDNPSLERLGRWP WPRSVHAQLLERLAQARPAAVVYDVLFTEASPDDAQLAAALARVPTWLPVLLGPENAAGARALTLPVPPLAARAAGMGHI NFEVDPDGIVRSVAPTESDGRRDWPQLMLAVARGITRAAAPAAGAALAASEAGPSRQGATPAGAMPHASRFAASLPGGRY LIPFSRGTPAYSSCSLADVLAGKVPDAALRGKVIVVGVTAAGLYDRFATPISGEFGPLPGVYLHANVLDMLLTGRAISPV SRGWLCLASLPPLAALLAGILLLSPRRALLLALSVAALSVAGSAALLYGARLWLTPAPAILGLIVVYPTWNWRRLDMTMA YLRDELERLAAEPHLLPESPRASGARAEFGGDPLERQMNLMAQAARRVQDMKRFVWDSLDSVPEPIFVTDVAGIVLIANH AARRYCARLRAASPEGRPLPAALGELAFVKSVAHPEREPDLRAAWPDALDPTRGEAPALLASGLEVRDADGLDHLLRYAP CTNAEGQAIGWIAGLVDVTALHAAERQREEALHLLSHDMRSPQASILALVRTERQRRDAGPAQRELLARIERHAQRALTL ADEFVQLARAESQTYRIDVVNLADLLLDASDEVWPQAQAKRIRIDTALGEAPCWIGAERSLMTRALVNLLSNAIKYSPAD TLVRCTLAFTEAPPRVTCTIRDQGYGIAPEHQRHLFERFRRFHAGERPEIAGTGLGMVFVKTVVTRHGGGIAVDSAPGRG TAIAITLPRLTDVADP >Mature_816_residues MKPDTGSRRRPPGRRFLLEWLAIGVLGVAAVLAGVAWQATASIDRLIYDHLLAARRLAPDPAIVVVEIDNPSLERLGRWP WPRSVHAQLLERLAQARPAAVVYDVLFTEASPDDAQLAAALARVPTWLPVLLGPENAAGARALTLPVPPLAARAAGMGHI NFEVDPDGIVRSVAPTESDGRRDWPQLMLAVARGITRAAAPAAGAALAASEAGPSRQGATPAGAMPHASRFAASLPGGRY LIPFSRGTPAYSSCSLADVLAGKVPDAALRGKVIVVGVTAAGLYDRFATPISGEFGPLPGVYLHANVLDMLLTGRAISPV SRGWLCLASLPPLAALLAGILLLSPRRALLLALSVAALSVAGSAALLYGARLWLTPAPAILGLIVVYPTWNWRRLDMTMA YLRDELERLAAEPHLLPESPRASGARAEFGGDPLERQMNLMAQAARRVQDMKRFVWDSLDSVPEPIFVTDVAGIVLIANH AARRYCARLRAASPEGRPLPAALGELAFVKSVAHPEREPDLRAAWPDALDPTRGEAPALLASGLEVRDADGLDHLLRYAP CTNAEGQAIGWIAGLVDVTALHAAERQREEALHLLSHDMRSPQASILALVRTERQRRDAGPAQRELLARIERHAQRALTL ADEFVQLARAESQTYRIDVVNLADLLLDASDEVWPQAQAKRIRIDTALGEAPCWIGAERSLMTRALVNLLSNAIKYSPAD TLVRCTLAFTEAPPRVTCTIRDQGYGIAPEHQRHLFERFRRFHAGERPEIAGTGLGMVFVKTVVTRHGGGIAVDSAPGRG TAIAITLPRLTDVADP
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: COG4252
COG function: function code T; Predicted transmembrane sensor domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=237, Percent_Identity=25.7383966244726, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1786783, Length=221, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788713, Length=373, Percent_Identity=23.3243967828418, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1789149, Length=228, Percent_Identity=26.7543859649123, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1790346, Length=232, Percent_Identity=25, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1788549, Length=438, Percent_Identity=22.8310502283105, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI1786912, Length=239, Percent_Identity=27.6150627615063, Blast_Score=74, Evalue=5e-14, Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=26.7782426778243, Blast_Score=73, Evalue=8e-14, Organism=Escherichia coli, GI145693157, Length=232, Percent_Identity=21.551724137931, Blast_Score=66, Evalue=9e-12, Organism=Escherichia coli, GI1787894, Length=129, Percent_Identity=31.0077519379845, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87543; Mature: 87543
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPDTGSRRRPPGRRFLLEWLAIGVLGVAAVLAGVAWQATASIDRLIYDHLLAARRLAPD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PAIVVVEIDNPSLERLGRWPWPRSVHAQLLERLAQARPAAVVYDVLFTEASPDDAQLAAA CCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCHHHHHHH LARVPTWLPVLLGPENAAGARALTLPVPPLAARAAGMGHINFEVDPDGIVRSVAPTESDG HHHCCCCCEEEECCCCCCCCEEEEECCCCHHHHHCCCCEEEEEECCCHHHHCCCCCCCCC RRDWPQLMLAVARGITRAAAPAAGAALAASEAGPSRQGATPAGAMPHASRFAASLPGGRY CCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE LIPFSRGTPAYSSCSLADVLAGKVPDAALRGKVIVVGVTAAGLYDRFATPISGEFGPLPG EEEECCCCCCCCCCCHHHHHHCCCCCHHHCCCEEEEEECHHHHHHHHCCCCCCCCCCCCC VYLHANVLDMLLTGRAISPVSRGWLCLASLPPLAALLAGILLLSPRRALLLALSVAALSV EEEHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AGSAALLYGARLWLTPAPAILGLIVVYPTWNWRRLDMTMAYLRDELERLAAEPHLLPESP CCCHHHHHCCHHEECCCHHHEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCC RASGARAEFGGDPLERQMNLMAQAARRVQDMKRFVWDSLDSVPEPIFVTDVAGIVLIANH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH AARRYCARLRAASPEGRPLPAALGELAFVKSVAHPEREPDLRAAWPDALDPTRGEAPALL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH ASGLEVRDADGLDHLLRYAPCTNAEGQAIGWIAGLVDVTALHAAERQREEALHLLSHDMR HCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPQASILALVRTERQRRDAGPAQRELLARIERHAQRALTLADEFVQLARAESQTYRIDVV CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH NLADLLLDASDEVWPQAQAKRIRIDTALGEAPCWIGAERSLMTRALVNLLSNAIKYSPAD HHHHHHHCCCCCCCCCHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH TLVRCTLAFTEAPPRVTCTIRDQGYGIAPEHQRHLFERFRRFHAGERPEIAGTGLGMVFV HHEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH KTVVTRHGGGIAVDSAPGRGTAIAITLPRLTDVADP HHHHHHCCCCEEEECCCCCCCEEEEEECCHHCCCCC >Mature Secondary Structure MKPDTGSRRRPPGRRFLLEWLAIGVLGVAAVLAGVAWQATASIDRLIYDHLLAARRLAPD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PAIVVVEIDNPSLERLGRWPWPRSVHAQLLERLAQARPAAVVYDVLFTEASPDDAQLAAA CCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCHHHHHHH LARVPTWLPVLLGPENAAGARALTLPVPPLAARAAGMGHINFEVDPDGIVRSVAPTESDG HHHCCCCCEEEECCCCCCCCEEEEECCCCHHHHHCCCCEEEEEECCCHHHHCCCCCCCCC RRDWPQLMLAVARGITRAAAPAAGAALAASEAGPSRQGATPAGAMPHASRFAASLPGGRY CCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE LIPFSRGTPAYSSCSLADVLAGKVPDAALRGKVIVVGVTAAGLYDRFATPISGEFGPLPG EEEECCCCCCCCCCCHHHHHHCCCCCHHHCCCEEEEEECHHHHHHHHCCCCCCCCCCCCC VYLHANVLDMLLTGRAISPVSRGWLCLASLPPLAALLAGILLLSPRRALLLALSVAALSV EEEHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AGSAALLYGARLWLTPAPAILGLIVVYPTWNWRRLDMTMAYLRDELERLAAEPHLLPESP CCCHHHHHCCHHEECCCHHHEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCC RASGARAEFGGDPLERQMNLMAQAARRVQDMKRFVWDSLDSVPEPIFVTDVAGIVLIANH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH AARRYCARLRAASPEGRPLPAALGELAFVKSVAHPEREPDLRAAWPDALDPTRGEAPALL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH ASGLEVRDADGLDHLLRYAPCTNAEGQAIGWIAGLVDVTALHAAERQREEALHLLSHDMR HCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPQASILALVRTERQRRDAGPAQRELLARIERHAQRALTLADEFVQLARAESQTYRIDVV CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH NLADLLLDASDEVWPQAQAKRIRIDTALGEAPCWIGAERSLMTRALVNLLSNAIKYSPAD HHHHHHHCCCCCCCCCHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH TLVRCTLAFTEAPPRVTCTIRDQGYGIAPEHQRHLFERFRRFHAGERPEIAGTGLGMVFV HHEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH KTVVTRHGGGIAVDSAPGRGTAIAITLPRLTDVADP HHHHHHCCCCEEEECCCCCCCEEEEEECCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]