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The map label for this gene is yhcS [C]

Identifier: 238027757

GI number: 238027757

Start: 2369274

End: 2370215

Strand: Reverse

Name: yhcS [C]

Synonym: bglu_1g21810

Alternate gene names: 238027757

Gene position: 2370215-2369274 (Counterclockwise)

Preceding gene: 238027762

Following gene: 238027756

Centisome position: 60.67

GC content: 67.83

Gene sequence:

>942_bases
ATGGATACGCTTCAGAACATGCGTGTGTTCGTGCGCGTGGTCGATGCGGGGAGCTTCACCGCTGCCGCCCAGCAGCTGAA
TTCGACCACCGCCTACGCCTCGCGCGCGGTGTCGGACCTGGAGGCGCATCTGCGCACGCGTCTGCTGAATCGCACCACGC
GCCGGATCGCGCTGACCGAGGCCGGCGAGCGCTACTTGCAGCGCTGCGAGCAGATCCTCGCCTACGTCGATCAGGCCGAG
GCGGAGGCCGGCGACGCGCATGCGCGTCCGTCGGGCAAGCTGCGGGTCCACAGCATGACGAGCCTCGGCCAGCACTACGC
GGTGCCGATGATTGCGCGTTACCGGCAGCGTTATCCCGAGGTGCAGGTGGACCTGACGCTCGCGCAGCGCCTGCCCGACC
TGCTCGACGAGGGCTTCGACGTATCGGTGGTGGTGGACCGGCATCTGCCCGATTCCGGGCTGGTCTCGCAGCGTCTGGGG
GAGACCTTCAGCGTTGCCTGCGCGTCGGCCGACTACCTCGAACGGCATGGCGTACCGCAGCGGCCCGAGGATCTGGACGC
GCACGCCTGCCTCGGGATGGTGGCGACCGGCTTCGTCTGGGACGACTGGACGCTGGTCGGGCCGGACGGCGAGGAGCATT
TCCCTCCCGCCCAGCGCTCGTTTTGCGTCAATGTGGCCGAGGCGCTGGCGGTGGCGATCCGCGAGGGCATGGGGGTGGGC
GTGCTGCCGCTGCATACGGCGATCGCCGGGCTGCGTGCCGGCGATTTCGTGCGGGTGATGCCCGAATATCGCTCTCACGT
GATGAATATCTACGCGCTGTACCCGTCGCGCCAATATCTCGACGCGAAGATTCGCACCTGGGTCGATTTCATGCGCGAGT
CGCTGCCGGCCATCATCGAGGCCGACATCGAGACGCTGCAGCGCTTCACGCGCGCGACCTGA

Upstream 100 bases:

>100_bases
CCGAATAAATCCGTAAGACCGCAAGGCATTTTTACGTTTTCTGGGACAATATTGCTGCGGTACTGTGCAACAATTTGCTC
GCATTGAAGGGGGAGTCGGT

Downstream 100 bases:

>100_bases
GCGGGCCAGCGCTGGCGCGGCCGCGCGTTTAACGTTGCTTTTCGGTTCGGCAACACTTTTTTACGCTCGAAACCTTTGTG
GTTTGCTACTGTTGAGCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQVDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLG
ETFSVACASADYLERHGVPQRPEDLDAHACLGMVATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG
VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRESLPAIIEADIETLQRFTRAT

Sequences:

>Translated_313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQVDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLG
ETFSVACASADYLERHGVPQRPEDLDAHACLGMVATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG
VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRESLPAIIEADIETLQRFTRAT
>Mature_313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQVDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLG
ETFSVACASADYLERHGVPQRPEDLDAHACLGMVATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG
VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRESLPAIIEADIETLQRFTRAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=33.9100346020761, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=33.5616438356164, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=29.96632996633, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=29.6551724137931, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=25.938566552901, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=24.0549828178694, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1788481, Length=302, Percent_Identity=23.1788079470199, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=153, Percent_Identity=31.3725490196078, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=172, Percent_Identity=26.1627906976744, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790011, Length=298, Percent_Identity=21.1409395973154, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=266, Percent_Identity=22.9323308270677, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34928; Mature: 34928

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHEEHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC
VQVDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLGETFSVACASADYLERHGVPQ
EEEEHHHHHHCHHHHHCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCC
RPEDLDAHACLGMVATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG
CCCCCCHHHHHHHHHHCEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRESLPAIIE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ADIETLQRFTRAT
HHHHHHHHHHCCC
>Mature Secondary Structure
MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHEEHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC
VQVDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLGETFSVACASADYLERHGVPQ
EEEEHHHHHHCHHHHHCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCC
RPEDLDAHACLGMVATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG
CCCCCCHHHHHHHHHHCEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRESLPAIIE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ADIETLQRFTRAT
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]