| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is uidR [C]
Identifier: 238027549
GI number: 238027549
Start: 2150683
End: 2151480
Strand: Direct
Name: uidR [C]
Synonym: bglu_1g19670
Alternate gene names: 238027549
Gene position: 2150683-2151480 (Clockwise)
Preceding gene: 238027548
Following gene: 238027550
Centisome position: 55.05
GC content: 69.67
Gene sequence:
>798_bases ATGGCGGTTCGGCAAGCCAGCCGGCAAACCGGCGGCACGAAGGCGCGCATTCTCGACGCAGCGGAAGACCTGTTCGTCGA ACATGGTTTCGAAGCGATGTCGATGCGGCAGATCACATCACGCGCCGCGGTGAATCTCGCGGCGGTCAATTACCACTTCG GCAGCAAGGAGGCGCTGATCCACGCGATGCTGTCGCGTCGCCTCGACCAGCTCAACGACGAGCGGCTGCGCATCCTCGAC CGCTTCGAGGCCCAGCTCGGCGAAGCCATCACCTGCGAGCACGTGCTCGGCGCGATGTTCATCCCGGCGCTGCAGGCCTC GCGCGATCCGCAGCGCGGCGGCCGCGCGTTCCTGCGCCTGATCGGCCGCGCCTACACCGACCCCTCCACCTTCGTGCGCG GCTTTCTGGCCGCGCATTACGCGAGCGTGGCCGGCCGCTTCTTCGATGCGTTCCAGCGCGCGCTGCCGCTGTTGCCGCGC GCCGAGCTGGGCTGGCGCCTGCACTATGCGATCGGCGCGCTGTCGGGCGCGCTCGCGGGTGCCGAGACCGACAGCCTGCT CGACGATTTCTCGCAGGGCCGCACCATGAACGACGTACAGCTGATCGCGCGCCTGTCCTCGCTGATCGTGGCCGCGCTGA AGGCACCGATGCCGGACACGGCGCAGATGTCGATCTTCGCGGCCGTGCTCGACGATGCGCAGCGCGGCAGCATCGCGCCG CCGAATGGCGGCGAGCTGCCGTCGGGACCGTTCGGCGCGTCGGCCGGCACGCGGCTGCATGCGCGGCACGCGTCTTGA
Upstream 100 bases:
>100_bases CCGCCCGCCCCCGCGCCTTTTTATCTTAATAAAAACGCTTGTTTCAATTACCGATTTGAATCGCTCGTTCGATAACCGAA ACAGTGATCATGGAGGCGAC
Downstream 100 bases:
>100_bases CGCGCGGCCCGCGCACGGCTCACGCACGGAATCGGCAGCACCAGTGCCCGCGGGCACCGCAGACGCGCTCGCCAGCCCAA CCCAAGAACGGCACGCGCCA
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Transcriptional Regulator PsrA; TetR Family Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; PsrA Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR; Transcliptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MAVRQASRQTGGTKARILDAAEDLFVEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAMLSRRLDQLNDERLRILD RFEAQLGEAITCEHVLGAMFIPALQASRDPQRGGRAFLRLIGRAYTDPSTFVRGFLAAHYASVAGRFFDAFQRALPLLPR AELGWRLHYAIGALSGALAGAETDSLLDDFSQGRTMNDVQLIARLSSLIVAALKAPMPDTAQMSIFAAVLDDAQRGSIAP PNGGELPSGPFGASAGTRLHARHAS
Sequences:
>Translated_265_residues MAVRQASRQTGGTKARILDAAEDLFVEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAMLSRRLDQLNDERLRILD RFEAQLGEAITCEHVLGAMFIPALQASRDPQRGGRAFLRLIGRAYTDPSTFVRGFLAAHYASVAGRFFDAFQRALPLLPR AELGWRLHYAIGALSGALAGAETDSLLDDFSQGRTMNDVQLIARLSSLIVAALKAPMPDTAQMSIFAAVLDDAQRGSIAP PNGGELPSGPFGASAGTRLHARHAS >Mature_264_residues AVRQASRQTGGTKARILDAAEDLFVEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAMLSRRLDQLNDERLRILDR FEAQLGEAITCEHVLGAMFIPALQASRDPQRGGRAFLRLIGRAYTDPSTFVRGFLAAHYASVAGRFFDAFQRALPLLPRA ELGWRLHYAIGALSGALAGAETDSLLDDFSQGRTMNDVQLIARLSSLIVAALKAPMPDTAQMSIFAAVLDDAQRGSIAPP NGGELPSGPFGASAGTRLHARHAS
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28598; Mature: 28467
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRQASRQTGGTKARILDAAEDLFVEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALI CCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH HAMLSRRLDQLNDERLRILDRFEAQLGEAITCEHVLGAMFIPALQASRDPQRGGRAFLRL HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH IGRAYTDPSTFVRGFLAAHYASVAGRFFDAFQRALPLLPRAELGWRLHYAIGALSGALAG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHCC AETDSLLDDFSQGRTMNDVQLIARLSSLIVAALKAPMPDTAQMSIFAAVLDDAQRGSIAP CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC PNGGELPSGPFGASAGTRLHARHAS CCCCCCCCCCCCCCCCCEEECCCCC >Mature Secondary Structure AVRQASRQTGGTKARILDAAEDLFVEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALI CCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH HAMLSRRLDQLNDERLRILDRFEAQLGEAITCEHVLGAMFIPALQASRDPQRGGRAFLRL HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH IGRAYTDPSTFVRGFLAAHYASVAGRFFDAFQRALPLLPRAELGWRLHYAIGALSGALAG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHCC AETDSLLDDFSQGRTMNDVQLIARLSSLIVAALKAPMPDTAQMSIFAAVLDDAQRGSIAP CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC PNGGELPSGPFGASAGTRLHARHAS CCCCCCCCCCCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA