| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yfhR [C]
Identifier: 238027377
GI number: 238027377
Start: 1945938
End: 1946732
Strand: Reverse
Name: yfhR [C]
Synonym: bglu_1g17720
Alternate gene names: 238027377
Gene position: 1946732-1945938 (Counterclockwise)
Preceding gene: 238027378
Following gene: 238027371
Centisome position: 49.83
GC content: 74.09
Gene sequence:
>795_bases ATGGCCGGCCTCGGGGTCGCCGCCGGCCTTTACCTGGCCGCGGCCGCCGGGCTGTACCTGATGCAGGACCGCCTGCTGCT GCCGTCGACGCCGGGCACGGCCGATCCGCGCGGCATGCCGCATCCTGGCGAGCGCGTCGAGCGCTGGCAGATCCGCGGCG CCTATGCCGGCTACGTCGTCACGCCGGCCGGGGCGGCGCCGCGCGGCACCGTGATCGTCTACCACGGCAACGAGGAGTCG GCGGAGACCAAGCTGCCGCTGGCGGACGTGTTCGCGCACGCCGGCTACCGCGTGGTGATCGCCGAATACCCGGGCCACGG CCGGCGTGCCGGAGCGCGCACCATGCGCGCCGCGCTGGCCGCCTCGCGCGAGGCGCTCGCGCAGACGCTGGCGAGCTGGC CCGGCGAGGTCTGGCTGGTGGGCGAATCACTCGGCGCGGGAATGGCCGCGCGGGTGGTGCAGGGCAACGAGCACGCGCTG GCCGGCGTCGCGCTGATCACGCCGTGGGACACGCTCGCCTCGGTGGCGCACGAGCAGTATCCAGCGTTTCCGGTGCGCTG GATGCTGCACGACCCGTTCGATTCGGTCGCGGCGACCGCCGCCTATCGCGGCCCGCTCGTGATCATCGGCTCGCAGCGCG ACACGCTGATCCCGGTGGCGCACGCCGAACGTCTGGCGCGCGCGCATCCCGGCAGCCGCCTGATGCTGCTGCCGGAGGCG AACCACGACAGCTGGTTCGACGCAATGACGGCGCCGCGCTGGCAGCAGGTGCTGCACTGGCTGGGAGCGGCATGA
Upstream 100 bases:
>100_bases GCGTCCTGCCCGCCTGCCGCGCGGCTCCCTATACTGGCTTGTTTCCATTGCGATGCCTCGACACCTCATGTCTGCCATCA TGTCTGCCAAACGGATCGTC
Downstream 100 bases:
>100_bases GGCGGCGCGAGGCGGCAGCCAGGCGGGCGCCGGCGCGTCGGCCCTCACCCCTTGGTCGCTCCGAAGGTCAGCCCGGCCAC GAAGTGCTTCTGCATCAGGA
Product: alpha/beta hydrolase BEM46
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Fold Family Hydrolase
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MAGLGVAAGLYLAAAAGLYLMQDRLLLPSTPGTADPRGMPHPGERVERWQIRGAYAGYVVTPAGAAPRGTVIVYHGNEES AETKLPLADVFAHAGYRVVIAEYPGHGRRAGARTMRAALAASREALAQTLASWPGEVWLVGESLGAGMAARVVQGNEHAL AGVALITPWDTLASVAHEQYPAFPVRWMLHDPFDSVAATAAYRGPLVIIGSQRDTLIPVAHAERLARAHPGSRLMLLPEA NHDSWFDAMTAPRWQQVLHWLGAA
Sequences:
>Translated_264_residues MAGLGVAAGLYLAAAAGLYLMQDRLLLPSTPGTADPRGMPHPGERVERWQIRGAYAGYVVTPAGAAPRGTVIVYHGNEES AETKLPLADVFAHAGYRVVIAEYPGHGRRAGARTMRAALAASREALAQTLASWPGEVWLVGESLGAGMAARVVQGNEHAL AGVALITPWDTLASVAHEQYPAFPVRWMLHDPFDSVAATAAYRGPLVIIGSQRDTLIPVAHAERLARAHPGSRLMLLPEA NHDSWFDAMTAPRWQQVLHWLGAA >Mature_263_residues AGLGVAAGLYLAAAAGLYLMQDRLLLPSTPGTADPRGMPHPGERVERWQIRGAYAGYVVTPAGAAPRGTVIVYHGNEESA ETKLPLADVFAHAGYRVVIAEYPGHGRRAGARTMRAALAASREALAQTLASWPGEVWLVGESLGAGMAARVVQGNEHALA GVALITPWDTLASVAHEQYPAFPVRWMLHDPFDSVAATAAYRGPLVIIGSQRDTLIPVAHAERLARAHPGSRLMLLPEAN HDSWFDAMTAPRWQQVLHWLGAA
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI49355781, Length=250, Percent_Identity=24.8, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28183; Mature: 28051
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGLGVAAGLYLAAAAGLYLMQDRLLLPSTPGTADPRGMPHPGERVERWQIRGAYAGYVV CCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCEEEEEEE TPAGAAPRGTVIVYHGNEESAETKLPLADVFAHAGYRVVIAEYPGHGRRAGARTMRAALA ECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH ASREALAQTLASWPGEVWLVGESLGAGMAARVVQGNEHALAGVALITPWDTLASVAHEQY HHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHC PAFPVRWMLHDPFDSVAATAAYRGPLVIIGSQRDTLIPVAHAERLARAHPGSRLMLLPEA CCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCCCEEEEEECC NHDSWFDAMTAPRWQQVLHWLGAA CCCCHHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure AGLGVAAGLYLAAAAGLYLMQDRLLLPSTPGTADPRGMPHPGERVERWQIRGAYAGYVV CCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCEEEEEEE TPAGAAPRGTVIVYHGNEESAETKLPLADVFAHAGYRVVIAEYPGHGRRAGARTMRAALA ECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH ASREALAQTLASWPGEVWLVGESLGAGMAARVVQGNEHALAGVALITPWDTLASVAHEQY HHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHC PAFPVRWMLHDPFDSVAATAAYRGPLVIIGSQRDTLIPVAHAERLARAHPGSRLMLLPEA CCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCCCEEEEEECC NHDSWFDAMTAPRWQQVLHWLGAA CCCCHHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA