| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027356
Identifier: 238027356
GI number: 238027356
Start: 1921199
End: 1924117
Strand: Direct
Name: 238027356
Synonym: bglu_1g17460
Alternate gene names: NA
Gene position: 1921199-1924117 (Clockwise)
Preceding gene: 238027355
Following gene: 238027357
Centisome position: 49.18
GC content: 61.73
Gene sequence:
>2919_bases ATGAATAACGAACTGAAACTGCGCGTCGTGTTCGATATGGTTGATCGACTGACGCGCCCGCTTCGCCAAACGCTCGCCGG TAGCAAGGGGCTGTCGCGCGCGCTCGCTGACACGAAGAAACAGCTTTCCGAATTGCAGAAGCAACAGAAGACCGTCGACG CAGTTAAGGCCGTCCGTACCGAAATGGGGCAGACCGCCACGAAGCTGAAAGCGGCGCAGGAGAAGTTCGCCGGACTGCAA GCGCAGATCAAGGCGACAGAAAATCCCACAGTACGCATGCAGAACGCGATGCGCCGGGCGTCTGCGTCAGTCGTCACGCT CACGCAGCAGCAGGAGAGGCAGCGGACCCGGCTTGGCGAGTTGAACGCACGCATGCAGCAGGCCGGGCGCGGCACGCAAA CGCTGACGGCGTACGAGAAATCGTTGCAGTCGAGCATCGCGAAAACGAACGAGACGATCGCGGAACAAGGGCGTCGGTTG CAGGCTGTACATGGGCGCCGTGCGGCGCTTGCGCCTGCGCGTGACCGCCTTCAGGCCGCGCGCGGTGCGGCGGCCGAAAT GGCGGTCGGCGGGTATGCGTCGCGCGCAGTCGGCGGGCGCGTGCTCGGCGGGGTCGGTGCAGTGCTCGATGAGTCGAAGC ACGCGAAGCTCGAAGAGGTGCGGATTCAAGCGCTCGGCGCCGGCGACCACGATACGAAAAAGGCTATCGATTTCGCGCGC AAACACAAGTCCTACGGCGTCAGCACGACGGAAAACCTCACGCTGATGCGCGACGCCATGACGATCCTCAACGACGAGCA TCACGCGGAAATGATTCTGCCGACGCTCTCGAAAATGAAGTTCGCGAATGATTCGCTGTTCGGTGCCGAGCAAGGCGGCG ACAATGAACAGAAGTTCATCAACATGTTGAAGGCGATCGAACAGCGCGGCGGCACGAACGACGCTGCAACGTTCAATCGC GAAGCGAACATGGTGCAGAAGGTCATCACCGCGACCGGCGGGCGCGTCGGTGGCGACCAGTGGCAGGAGTTCATCAAGAC GGGCGGCACGGCCGCCAAGCTGATGCGTCCGGATGCGTTCTACTACCAGATGGAGCCGCTCATTCAGGAAATGGGCGGTG ACACGGTGGGTAGTGCGGTCATGTCCGGTTATCAAAACCTGATCGAAGGGCGCACGACAGTGCGGGCGACGCGCAAACTC ATGTCGCTCGGCCTGCTCGACAAAAAGAAGGTCGAGTGGAACAAGAAAACCGGGCTCGTGAAGGCGTTCGCCGATGGCGC ACTGCTGAACACCGATCAGTTCAAGTCGTCGCCGTTCGAGTGGTTGGAACAAACGCTGCTCCCGCAGTTTGAGAAGAAGG GCATCACGAAGGAACGCGACGTTCTCAGTGCGATCAGTTCGATTTTCACGAACCGGCGTGCGTCGAACCTGTTTGCCACG ATGTTCCTGCAACGCAAGGCGATTCATAAGAGCGTGGCACTGAACGAACACGCTTACGACATCGATCAAGGGTTCAACGT CGGCCAGACGTTGCCGCAGGGTAAGGAAATCGACGCCTTGTCGAAGAAAGCGATTCTCGAAGAACAGCTAGGGTCGAAGA TCCTGCCGCTGTATAACCGCGGACTCGAACTGACTGCAAACCTGATCGAGCGCGTGAGCGGGTGGACCGAGCGGAACGCT GGCACGGCGCGCGCACTTGCTATCGGTCTGGCTGCGCTCGGCGCGGTGCTCGTGGGCGGGGGCTCGCTGACGATCGGGTT GGCGGCGATTATTGGGCCGCTGGCGCTGACCCGCTACGGGCTGGCAATGCTCAGCGTGCAGGGCGGCTTGATGCGCGGCA CGTTGGCTATGTTGGGTGGTGCATTCCGCGCGTTCGGTGGCGCGATCTTCGCCGTCGGCCGCCTGCTGCTGATGAACCCG ATCGGCCTTGCGATTGCGGCAGTCGTCGCTGTAATTGCCGGAGCGGCCTACCTGATTTACCGGTACTGGAAACCGATCTC GGCCTTCTTCGCGAAGGTGTGGGACGGCATCAAGCGGACGGTGCAGACCGTCGGCGGCTGGATTGTCGATTACCTGATGA ATTGGACTGTGGTCGGCTTCATTGTCGATCACTGGACCGATTTGAAGGCGATCACGCTGGCAATCTGGGAACTGATCAAA TCCGGGGTGCTGCGTGCCGCGCAGGCCGTCGGAGACTTCTTCATGAACTGGACGATCGTCGGTGCGATCGTGCGCCATTG GGACGACATCAAGGCCGCAACGGGCGCGGCATGGGACTGGATCAAGTCAACTGCGATGGGTGCCGGTGGCGCGATACTCG ATTTCTTCATGAACTGGACCCTGCTCGGTGTGGTGATTCGGCATTGGGACAGCATCATGTCCTACATGTCTGGGATCGCA AGCCGCTTTATCGAAATCGGCGGCAACATCGTTGACGGGCTCGTGAACGGCATCACGGGCGGCATGAACGCGCTGCGCAC AGCGCTGCACAACGTCGGCGAAAACGCGATCGGCTGGTTCAAGGAAAAGCTTGGCATTCATAGCCCGAGCCGCGTTTTCG CAGCGCTCGGCGGGTTCATCGGGCAGGGCGCGGCACAAGGCATCGAGGGTGAGCGCGCGAGCGTGGCCGGTGCCGCTGCC CGGCTCGCCGGGGCCGCGTCGATCACGTTCGGCGCGCTGACGGCGAACGCTGCGCCGTCGCCGTTGGAAATGCGACCGCT GATCGACACCCGGCCGCCGCTGTCGGCCGCGAGTGCGGCGCCGTCGGCGACAGTCGATAGTGGAACGCGGAATTACTACA TCACGATCAACGTAGCGAATGGTGACAACGTGAAGGAATTCGAGGCAGCCGTGCGCCGTGTGATTGATCAGGTCGAGCGC GAGGATCGTCGTCGCGTCAGCTCGCGCCTGTCCGACTGA
Upstream 100 bases:
>100_bases GTGGCGACGGTGTTTGGCTGGACGCCCGTCGTCATGGATCAGATGACGGTTTCTGAACTGATGGAGTGGCGCGAGCGGGC GCGAGTGCGATACGAACGAA
Downstream 100 bases:
>100_bases GGCCGCCATGCTGCTCTCTCTCGGACAATTCGTTTTCGGCACACTCACGGCGCCGTTTAGCGAAATGCAGCGTCGCCGCA CGTGGAAGTTCGCGAGCAAT
Product: phage-related tail transmembrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 972; Mature: 972
Protein sequence:
>972_residues MNNELKLRVVFDMVDRLTRPLRQTLAGSKGLSRALADTKKQLSELQKQQKTVDAVKAVRTEMGQTATKLKAAQEKFAGLQ AQIKATENPTVRMQNAMRRASASVVTLTQQQERQRTRLGELNARMQQAGRGTQTLTAYEKSLQSSIAKTNETIAEQGRRL QAVHGRRAALAPARDRLQAARGAAAEMAVGGYASRAVGGRVLGGVGAVLDESKHAKLEEVRIQALGAGDHDTKKAIDFAR KHKSYGVSTTENLTLMRDAMTILNDEHHAEMILPTLSKMKFANDSLFGAEQGGDNEQKFINMLKAIEQRGGTNDAATFNR EANMVQKVITATGGRVGGDQWQEFIKTGGTAAKLMRPDAFYYQMEPLIQEMGGDTVGSAVMSGYQNLIEGRTTVRATRKL MSLGLLDKKKVEWNKKTGLVKAFADGALLNTDQFKSSPFEWLEQTLLPQFEKKGITKERDVLSAISSIFTNRRASNLFAT MFLQRKAIHKSVALNEHAYDIDQGFNVGQTLPQGKEIDALSKKAILEEQLGSKILPLYNRGLELTANLIERVSGWTERNA GTARALAIGLAALGAVLVGGGSLTIGLAAIIGPLALTRYGLAMLSVQGGLMRGTLAMLGGAFRAFGGAIFAVGRLLLMNP IGLAIAAVVAVIAGAAYLIYRYWKPISAFFAKVWDGIKRTVQTVGGWIVDYLMNWTVVGFIVDHWTDLKAITLAIWELIK SGVLRAAQAVGDFFMNWTIVGAIVRHWDDIKAATGAAWDWIKSTAMGAGGAILDFFMNWTLLGVVIRHWDSIMSYMSGIA SRFIEIGGNIVDGLVNGITGGMNALRTALHNVGENAIGWFKEKLGIHSPSRVFAALGGFIGQGAAQGIEGERASVAGAAA RLAGAASITFGALTANAAPSPLEMRPLIDTRPPLSAASAAPSATVDSGTRNYYITINVANGDNVKEFEAAVRRVIDQVER EDRRRVSSRLSD
Sequences:
>Translated_972_residues MNNELKLRVVFDMVDRLTRPLRQTLAGSKGLSRALADTKKQLSELQKQQKTVDAVKAVRTEMGQTATKLKAAQEKFAGLQ AQIKATENPTVRMQNAMRRASASVVTLTQQQERQRTRLGELNARMQQAGRGTQTLTAYEKSLQSSIAKTNETIAEQGRRL QAVHGRRAALAPARDRLQAARGAAAEMAVGGYASRAVGGRVLGGVGAVLDESKHAKLEEVRIQALGAGDHDTKKAIDFAR KHKSYGVSTTENLTLMRDAMTILNDEHHAEMILPTLSKMKFANDSLFGAEQGGDNEQKFINMLKAIEQRGGTNDAATFNR EANMVQKVITATGGRVGGDQWQEFIKTGGTAAKLMRPDAFYYQMEPLIQEMGGDTVGSAVMSGYQNLIEGRTTVRATRKL MSLGLLDKKKVEWNKKTGLVKAFADGALLNTDQFKSSPFEWLEQTLLPQFEKKGITKERDVLSAISSIFTNRRASNLFAT MFLQRKAIHKSVALNEHAYDIDQGFNVGQTLPQGKEIDALSKKAILEEQLGSKILPLYNRGLELTANLIERVSGWTERNA GTARALAIGLAALGAVLVGGGSLTIGLAAIIGPLALTRYGLAMLSVQGGLMRGTLAMLGGAFRAFGGAIFAVGRLLLMNP IGLAIAAVVAVIAGAAYLIYRYWKPISAFFAKVWDGIKRTVQTVGGWIVDYLMNWTVVGFIVDHWTDLKAITLAIWELIK SGVLRAAQAVGDFFMNWTIVGAIVRHWDDIKAATGAAWDWIKSTAMGAGGAILDFFMNWTLLGVVIRHWDSIMSYMSGIA SRFIEIGGNIVDGLVNGITGGMNALRTALHNVGENAIGWFKEKLGIHSPSRVFAALGGFIGQGAAQGIEGERASVAGAAA RLAGAASITFGALTANAAPSPLEMRPLIDTRPPLSAASAAPSATVDSGTRNYYITINVANGDNVKEFEAAVRRVIDQVER EDRRRVSSRLSD >Mature_972_residues MNNELKLRVVFDMVDRLTRPLRQTLAGSKGLSRALADTKKQLSELQKQQKTVDAVKAVRTEMGQTATKLKAAQEKFAGLQ AQIKATENPTVRMQNAMRRASASVVTLTQQQERQRTRLGELNARMQQAGRGTQTLTAYEKSLQSSIAKTNETIAEQGRRL QAVHGRRAALAPARDRLQAARGAAAEMAVGGYASRAVGGRVLGGVGAVLDESKHAKLEEVRIQALGAGDHDTKKAIDFAR KHKSYGVSTTENLTLMRDAMTILNDEHHAEMILPTLSKMKFANDSLFGAEQGGDNEQKFINMLKAIEQRGGTNDAATFNR EANMVQKVITATGGRVGGDQWQEFIKTGGTAAKLMRPDAFYYQMEPLIQEMGGDTVGSAVMSGYQNLIEGRTTVRATRKL MSLGLLDKKKVEWNKKTGLVKAFADGALLNTDQFKSSPFEWLEQTLLPQFEKKGITKERDVLSAISSIFTNRRASNLFAT MFLQRKAIHKSVALNEHAYDIDQGFNVGQTLPQGKEIDALSKKAILEEQLGSKILPLYNRGLELTANLIERVSGWTERNA GTARALAIGLAALGAVLVGGGSLTIGLAAIIGPLALTRYGLAMLSVQGGLMRGTLAMLGGAFRAFGGAIFAVGRLLLMNP IGLAIAAVVAVIAGAAYLIYRYWKPISAFFAKVWDGIKRTVQTVGGWIVDYLMNWTVVGFIVDHWTDLKAITLAIWELIK SGVLRAAQAVGDFFMNWTIVGAIVRHWDDIKAATGAAWDWIKSTAMGAGGAILDFFMNWTLLGVVIRHWDSIMSYMSGIA SRFIEIGGNIVDGLVNGITGGMNALRTALHNVGENAIGWFKEKLGIHSPSRVFAALGGFIGQGAAQGIEGERASVAGAAA RLAGAASITFGALTANAAPSPLEMRPLIDTRPPLSAASAAPSATVDSGTRNYYITINVANGDNVKEFEAAVRRVIDQVER EDRRRVSSRLSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105036; Mature: 105036
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: PS00287 CYSTATIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNELKLRVVFDMVDRLTRPLRQTLAGSKGLSRALADTKKQLSELQKQQKTVDAVKAVRT CCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EMGQTATKLKAAQEKFAGLQAQIKATENPTVRMQNAMRRASASVVTLTQQQERQRTRLGE HHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH LNARMQQAGRGTQTLTAYEKSLQSSIAKTNETIAEQGRRLQAVHGRRAALAPARDRLQAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHHHHHHH RGAAAEMAVGGYASRAVGGRVLGGVGAVLDESKHAKLEEVRIQALGAGDHDTKKAIDFAR HCCHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH KHKSYGVSTTENLTLMRDAMTILNDEHHAEMILPTLSKMKFANDSLFGAEQGGDNEQKFI HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH NMLKAIEQRGGTNDAATFNREANMVQKVITATGGRVGGDQWQEFIKTGGTAAKLMRPDAF HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCHH YYQMEPLIQEMGGDTVGSAVMSGYQNLIEGRTTVRATRKLMSLGLLDKKKVEWNKKTGLV HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHCCCCHHHCHH KAFADGALLNTDQFKSSPFEWLEQTLLPQFEKKGITKERDVLSAISSIFTNRRASNLFAT HHHHCCCEECCHHHCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH MFLQRKAIHKSVALNEHAYDIDQGFNVGQTLPQGKEIDALSKKAILEEQLGSKILPLYNR HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHC GLELTANLIERVSGWTERNAGTARALAIGLAALGAVLVGGGSLTIGLAAIIGPLALTRYG CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LAMLSVQGGLMRGTLAMLGGAFRAFGGAIFAVGRLLLMNPIGLAIAAVVAVIAGAAYLIY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RYWKPISAFFAKVWDGIKRTVQTVGGWIVDYLMNWTVVGFIVDHWTDLKAITLAIWELIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH SGVLRAAQAVGDFFMNWTIVGAIVRHWDDIKAATGAAWDWIKSTAMGAGGAILDFFMNWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH LLGVVIRHWDSIMSYMSGIASRFIEIGGNIVDGLVNGITGGMNALRTALHNVGENAIGWF HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH KEKLGIHSPSRVFAALGGFIGQGAAQGIEGERASVAGAAARLAGAASITFGALTANAAPS HHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLEMRPLIDTRPPLSAASAAPSATVDSGTRNYYITINVANGDNVKEFEAAVRRVIDQVER CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH EDRRRVSSRLSD HHHHHHHHHCCC >Mature Secondary Structure MNNELKLRVVFDMVDRLTRPLRQTLAGSKGLSRALADTKKQLSELQKQQKTVDAVKAVRT CCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EMGQTATKLKAAQEKFAGLQAQIKATENPTVRMQNAMRRASASVVTLTQQQERQRTRLGE HHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH LNARMQQAGRGTQTLTAYEKSLQSSIAKTNETIAEQGRRLQAVHGRRAALAPARDRLQAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHHHHHHH RGAAAEMAVGGYASRAVGGRVLGGVGAVLDESKHAKLEEVRIQALGAGDHDTKKAIDFAR HCCHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH KHKSYGVSTTENLTLMRDAMTILNDEHHAEMILPTLSKMKFANDSLFGAEQGGDNEQKFI HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH NMLKAIEQRGGTNDAATFNREANMVQKVITATGGRVGGDQWQEFIKTGGTAAKLMRPDAF HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCHH YYQMEPLIQEMGGDTVGSAVMSGYQNLIEGRTTVRATRKLMSLGLLDKKKVEWNKKTGLV HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHCCCCHHHCHH KAFADGALLNTDQFKSSPFEWLEQTLLPQFEKKGITKERDVLSAISSIFTNRRASNLFAT HHHHCCCEECCHHHCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH MFLQRKAIHKSVALNEHAYDIDQGFNVGQTLPQGKEIDALSKKAILEEQLGSKILPLYNR HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHC GLELTANLIERVSGWTERNAGTARALAIGLAALGAVLVGGGSLTIGLAAIIGPLALTRYG CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LAMLSVQGGLMRGTLAMLGGAFRAFGGAIFAVGRLLLMNPIGLAIAAVVAVIAGAAYLIY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RYWKPISAFFAKVWDGIKRTVQTVGGWIVDYLMNWTVVGFIVDHWTDLKAITLAIWELIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH SGVLRAAQAVGDFFMNWTIVGAIVRHWDDIKAATGAAWDWIKSTAMGAGGAILDFFMNWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH LLGVVIRHWDSIMSYMSGIASRFIEIGGNIVDGLVNGITGGMNALRTALHNVGENAIGWF HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH KEKLGIHSPSRVFAALGGFIGQGAAQGIEGERASVAGAAARLAGAASITFGALTANAAPS HHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLEMRPLIDTRPPLSAASAAPSATVDSGTRNYYITINVANGDNVKEFEAAVRRVIDQVER CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH EDRRRVSSRLSD HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA