| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is lgrC [H]
Identifier: 238027312
GI number: 238027312
Start: 1885751
End: 1887238
Strand: Reverse
Name: lgrC [H]
Synonym: bglu_1g17000
Alternate gene names: 238027312
Gene position: 1887238-1885751 (Counterclockwise)
Preceding gene: 238027315
Following gene: 238027311
Centisome position: 48.31
GC content: 70.23
Gene sequence:
>1488_bases TTGACCTCCGTCAGCGTCAACCGGCTGTTCGATTCCCAAGCGCGGCTGAACCCCGGCGCGATCGCCGTGTCGGGTGGCGG CACGCATCTCACCTACGCGCAGCTGGCGCGCTGCGCCGATCATCTCGCGCGGCGTCTCGTCGAGGCGGGGGTCAGGCCGC TCGATCGCGTGCTGCTGTGCCTGCCGCGCTCGCTCGACGCGGTAATCGCGATGCTCGCCGTGGCCAAGACGGGCGCGGCG TTCGTCCCGGTGGATCCGTCCTATGCCGCACCGGTCCTGCACGCCTACGCGCTCGATAGCGGCGCGCGCTACGCGCTGGT GCGTCCTGGCGAAGGCGCGGCGCTGGGCGAGGCGGCACGGCTCATCGAGGCGCACGATCTCGCTGCCGCGCGCGACGCCG ACGCCCCCGTGGTGGATGCAGGCCACGACGGCGAAGCGCCGGTCTACGTGATGTTCACTTCGGGCAGCACGGGCCGCCCG AAGGGCGTGATCGTGCCGCATCGGGGCGTGGTACGTCTGGTGCGCGACACCAACTACATCCGGATCGACGCGACCGATAC GCTCGCGCTGCTCTCGCCCATCACCTTCGACGCCTCGACCTTCGAGATCTGGGGCGCGCTGCTCAACGGCGCGCGGCTCG CGGTCTACCAGGAGCCGGGCTTCGATCCGAACGCGGTCGGCCGGCTGGTGGCCGAGCAGCGCGTGACGGTGATGTGGCTG ACCGCTGCGCTGTTCCATCTGGTGGCGCGCCGCTTCGTGCGGCTGCTCGACGGCGTGCGGGTACTGCTGGCGGGCGGCGA CGTGCTGCACGCGAAAGCGGTCCACGCGGTATTCGACGCCCACCCCGGGATCATCCTCGTCAACGGCTACGGGCCGACCG AGAACACTACCTTCACCTGCTGCCACGTGATGCGCAATGCCGAGCGCCCGCAAGGCTCCGTGCCGATCGGCCGCGCGATC ACGGGCACCACGCTGTGGGTGCTCGACGAAGCGCTGCAGCCGGTGCCCGACGGCACGGAAGGCGAGCTCTGCGTGGGCGG CGCCGGTGTCGCGCTCGGTTATCTGAACGCCCCCGAGGCGACGCGTGCCGCGTTCCTCACCTGGCCGCACCAGCACGGCC TGCTGTATCGCACCGGCGACCGGGTACGGCGCGGGCATGACGGCGTGGTCGAATTCCTCGGTCGCAAGGACCGGCTGGTG AAGATTCGCGGCTATCGCGTCTCGCTCGACGAACTGCAGAAAGTGATCGCGACGATTCCAGGCGTGGAAGAGGCGATCGT CTCGGTATCGGAGGACACGCTCGGCGAGCGGCGGCTCACCGCGACCCTGCAGGCCGCCGATGCCGGCCCCGAGCAGCAGG CCTTCGTGCGCCGCGAGCTGCGCAAGCGCGTGCCGCCGTTCCAGATTCCCGACGAGATCCATATCCATTCCCACCTGCCG TTGAACGCCAACGGCAAGCTCGACCGGCACCGCGTGCCGGCTGCATGA
Upstream 100 bases:
>100_bases TGACCGCCGTCGCCGCGCCGCCCTGCTCCGGTCGCCGTTCGGTGCTGGCTTCATACCGGGCATCATTCGGCATCCTATTT TTTCGGGGAGATTCATCATC
Downstream 100 bases:
>100_bases CGAGCCCCTGCCTATCCGGAGAGAAGCTATGACCAACACCATCGATATCACCGAAACCATCCAGGCGACTTGCCGCGAGC TGTTGAAGTTGCCCGACCTC
Product: peptide synthetase
Products: pyrophosphate; AMP; enterobactin; pyrophosphate; L-Seryl-AMP [C]
Alternate protein names: ATP-dependent valine adenylase; ValA; Valine activase; ATP-dependent D-valine adenylase; D-ValA; D-valine activase; Valine racemase [ATP-hydrolyzing]; ATP-dependent tryptophan adenylase; TrpA; Tryptophan activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing]; ATP-dependent tryptophan/phenylalanine/tyrosine adenylase; Trp/Phe/TyrA; Tryptophan/phenylalanine/tyrosine activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing] [H]
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MTSVSVNRLFDSQARLNPGAIAVSGGGTHLTYAQLARCADHLARRLVEAGVRPLDRVLLCLPRSLDAVIAMLAVAKTGAA FVPVDPSYAAPVLHAYALDSGARYALVRPGEGAALGEAARLIEAHDLAAARDADAPVVDAGHDGEAPVYVMFTSGSTGRP KGVIVPHRGVVRLVRDTNYIRIDATDTLALLSPITFDASTFEIWGALLNGARLAVYQEPGFDPNAVGRLVAEQRVTVMWL TAALFHLVARRFVRLLDGVRVLLAGGDVLHAKAVHAVFDAHPGIILVNGYGPTENTTFTCCHVMRNAERPQGSVPIGRAI TGTTLWVLDEALQPVPDGTEGELCVGGAGVALGYLNAPEATRAAFLTWPHQHGLLYRTGDRVRRGHDGVVEFLGRKDRLV KIRGYRVSLDELQKVIATIPGVEEAIVSVSEDTLGERRLTATLQAADAGPEQQAFVRRELRKRVPPFQIPDEIHIHSHLP LNANGKLDRHRVPAA
Sequences:
>Translated_495_residues MTSVSVNRLFDSQARLNPGAIAVSGGGTHLTYAQLARCADHLARRLVEAGVRPLDRVLLCLPRSLDAVIAMLAVAKTGAA FVPVDPSYAAPVLHAYALDSGARYALVRPGEGAALGEAARLIEAHDLAAARDADAPVVDAGHDGEAPVYVMFTSGSTGRP KGVIVPHRGVVRLVRDTNYIRIDATDTLALLSPITFDASTFEIWGALLNGARLAVYQEPGFDPNAVGRLVAEQRVTVMWL TAALFHLVARRFVRLLDGVRVLLAGGDVLHAKAVHAVFDAHPGIILVNGYGPTENTTFTCCHVMRNAERPQGSVPIGRAI TGTTLWVLDEALQPVPDGTEGELCVGGAGVALGYLNAPEATRAAFLTWPHQHGLLYRTGDRVRRGHDGVVEFLGRKDRLV KIRGYRVSLDELQKVIATIPGVEEAIVSVSEDTLGERRLTATLQAADAGPEQQAFVRRELRKRVPPFQIPDEIHIHSHLP LNANGKLDRHRVPAA >Mature_494_residues TSVSVNRLFDSQARLNPGAIAVSGGGTHLTYAQLARCADHLARRLVEAGVRPLDRVLLCLPRSLDAVIAMLAVAKTGAAF VPVDPSYAAPVLHAYALDSGARYALVRPGEGAALGEAARLIEAHDLAAARDADAPVVDAGHDGEAPVYVMFTSGSTGRPK GVIVPHRGVVRLVRDTNYIRIDATDTLALLSPITFDASTFEIWGALLNGARLAVYQEPGFDPNAVGRLVAEQRVTVMWLT AALFHLVARRFVRLLDGVRVLLAGGDVLHAKAVHAVFDAHPGIILVNGYGPTENTTFTCCHVMRNAERPQGSVPIGRAIT GTTLWVLDEALQPVPDGTEGELCVGGAGVALGYLNAPEATRAAFLTWPHQHGLLYRTGDRVRRGHDGVVEFLGRKDRLVK IRGYRVSLDELQKVIATIPGVEEAIVSVSEDTLGERRLTATLQAADAGPEQQAFVRRELRKRVPPFQIPDEIHIHSHLPL NANGKLDRHRVPAA
Specific function: Activates the 7th to 12th amino acids (Val, D-Val, Trp, D-Leu, Xaa and D-Leu) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 8th (D-Val), the 10th (D- Leu) an
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 6 acyl carrier domains [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=550, Percent_Identity=24.7272727272727, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI38505220, Length=511, Percent_Identity=24.6575342465753, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI45580730, Length=523, Percent_Identity=24.8565965583174, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI28416953, Length=547, Percent_Identity=25.2285191956124, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI157311624, Length=521, Percent_Identity=23.0326295585413, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI157311622, Length=521, Percent_Identity=23.0326295585413, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI58082049, Length=525, Percent_Identity=22.6666666666667, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI122937307, Length=515, Percent_Identity=22.3300970873786, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI115511026, Length=520, Percent_Identity=21.7307692307692, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI42544132, Length=514, Percent_Identity=20.8171206225681, Blast_Score=83, Evalue=5e-16, Organism=Escherichia coli, GI1786801, Length=524, Percent_Identity=31.2977099236641, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI145693145, Length=519, Percent_Identity=26.7822736030828, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1790505, Length=520, Percent_Identity=23.0769230769231, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1788107, Length=551, Percent_Identity=23.7749546279492, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1789201, Length=360, Percent_Identity=27.5, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786810, Length=516, Percent_Identity=24.4186046511628, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI221142682, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17556356, Length=502, Percent_Identity=24.3027888446215, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560140, Length=498, Percent_Identity=24.0963855421687, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17559526, Length=365, Percent_Identity=24.9315068493151, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17550940, Length=344, Percent_Identity=24.7093023255814, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319591, Length=559, Percent_Identity=24.6869409660107, Blast_Score=110, Evalue=6e-25, Organism=Saccharomyces cerevisiae, GI6319699, Length=529, Percent_Identity=22.3062381852552, Blast_Score=83, Evalue=8e-17, Organism=Drosophila melanogaster, GI24648676, Length=535, Percent_Identity=28.411214953271, Blast_Score=152, Evalue=7e-37, Organism=Drosophila melanogaster, GI24582852, Length=451, Percent_Identity=25.7206208425721, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI19922652, Length=501, Percent_Identity=23.3532934131737, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI18859661, Length=438, Percent_Identity=25.3424657534247, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24648260, Length=290, Percent_Identity=24.8275862068966, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR023213 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 53156; Mature: 53024
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSVSVNRLFDSQARLNPGAIAVSGGGTHLTYAQLARCADHLARRLVEAGVRPLDRVLLC CCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPRSLDAVIAMLAVAKTGAAFVPVDPSYAAPVLHAYALDSGARYALVRPGEGAALGEAAR CCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHH LIEAHDLAAARDADAPVVDAGHDGEAPVYVMFTSGSTGRPKGVIVPHRGVVRLVRDTNYI HHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEE RIDATDTLALLSPITFDASTFEIWGALLNGARLAVYQEPGFDPNAVGRLVAEQRVTVMWL EEECCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHH TAALFHLVARRFVRLLDGVRVLLAGGDVLHAKAVHAVFDAHPGIILVNGYGPTENTTFTC HHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH CHVMRNAERPQGSVPIGRAITGTTLWVLDEALQPVPDGTEGELCVGGAGVALGYLNAPEA HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCH TRAAFLTWPHQHGLLYRTGDRVRRGHDGVVEFLGRKDRLVKIRGYRVSLDELQKVIATIP HCEEEEECCCCCCCEEECCHHHHCCCHHHHHHHCCCCCEEEEECEEECHHHHHHHHHHCC GVEEAIVSVSEDTLGERRLTATLQAADAGPEQQAFVRRELRKRVPPFQIPDEIHIHSHLP CHHHHHHCCCHHHCCCHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC LNANGKLDRHRVPAA CCCCCCCCCCCCCCC >Mature Secondary Structure TSVSVNRLFDSQARLNPGAIAVSGGGTHLTYAQLARCADHLARRLVEAGVRPLDRVLLC CCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPRSLDAVIAMLAVAKTGAAFVPVDPSYAAPVLHAYALDSGARYALVRPGEGAALGEAAR CCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHH LIEAHDLAAARDADAPVVDAGHDGEAPVYVMFTSGSTGRPKGVIVPHRGVVRLVRDTNYI HHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEE RIDATDTLALLSPITFDASTFEIWGALLNGARLAVYQEPGFDPNAVGRLVAEQRVTVMWL EEECCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHH TAALFHLVARRFVRLLDGVRVLLAGGDVLHAKAVHAVFDAHPGIILVNGYGPTENTTFTC HHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH CHVMRNAERPQGSVPIGRAITGTTLWVLDEALQPVPDGTEGELCVGGAGVALGYLNAPEA HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCH TRAAFLTWPHQHGLLYRTGDRVRRGHDGVVEFLGRKDRLVKIRGYRVSLDELQKVIATIP HCEEEEECCCCCCCEEECCHHHHCCCHHHHHHHCCCCCEEEEECEEECHHHHHHHHHHCC GVEEAIVSVSEDTLGERRLTATLQAADAGPEQQAFVRRELRKRVPPFQIPDEIHIHSHLP CHHHHHHCCCHHHCCCHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC LNANGKLDRHRVPAA CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Phosphopantetheine. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 6 ATP; L-serine; 2,3-dihydroxybenzoate [C]
Specific reaction: 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Seryl-AMP 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Ser
General reaction: Transferases; Acyltransferases; Transferring groups other than amino-acyl groups [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA