| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yusP [H]
Identifier: 238027267
GI number: 238027267
Start: 1815820
End: 1817403
Strand: Reverse
Name: yusP [H]
Synonym: bglu_1g16540
Alternate gene names: 238027267
Gene position: 1817403-1815820 (Counterclockwise)
Preceding gene: 238027268
Following gene: 238027265
Centisome position: 46.52
GC content: 71.28
Gene sequence:
>1584_bases GTGAACCACGCCTCGCCCTCCCTGACCTTTCGCGACGCGCTGCTCGCGATGCTCGGCATCGGCCTCGTCAACATGCTGGT CGCGCTCGACCAGACCGTGGTCAGCACGGCGCTGCCGTCGATCGTCGCCGACCTGCACGGCTTCGAGTACTACGCCTGGA TCGCCAGTGCCTACCTGCTCGCCTCGGTCGTGACGGTGCCGGTCTTCGGCCGGCTCGGCGACTACTTCGGGCGCAAGCGC TTCGTGGTGGCGGCGGTGATCGTGTTCACGCTCGCCTCGGTGCTGTGCGCGCTCGCCACCGACATGCGCATGCTGGCCGT GGCGCGCGCGCTGCAGGGGGTGGGCGGCGGAATGATGGTGGGCACCGCGTTCGCGTCGATCCCCGATCTGTTTCCCGATC CGCGCGAGCGTGTCCGCTGGCAGGTGGTGATGGCCGCCACCTACGGGATCGGCACGGCGGCCGGGCCGTCGCTGGGCGGC TGGCTGAGCCAGCATTTCGGCTGGCGCTCGACGTTCCTGATCAACGTGCCGGTGGGCGCGCTGGCGCTCTACTTCATCTG GCGGCACCTGCCGCATTTCGCGCGCCCGCGCGAAGGCGAGGTCCGCATCGACTACGCCGGCGCGGTGCTGGTGGCGATCA CGCTCGGCTGCCTGCAGTTCCTGATCGAGGCGTTGCCGGCACGCGGCTTCGGTGCCGGCACCGTGGCGCTGGCCGCGGTG GTGGCGCTCTCGTTCGGCGCGTTCCTCGCCTGCGAGCGCCGCGCCACGCACCCGATCGTGCCGCTCGACCTGTTCCGCGA TGCGCAGCTCGTCACGCTGTTTACGCTCTCGACGCTGGCCGGCTTCGTGATGTTCTCGCTGATCTTTTTCGCGCCGCTGC TGCTGCAGGGCGGCTTCGGCCTCGACCCCGAGACGGCCGGCCTGCTCGCCACGCCGATCGCCGCCTGCATCGCCCTCGGC AGCCTGATCAACATCCGCATCGTCACGCATCTGAAGCGCCCCACGCTGATCCTCTCGGTCGGCTTCGGCCTGCTCGCGGC CGCCTCCGCCACGCTGGCCCTGACCGGGCCGCTCACGCCGCATCTGGTGCTGGAGGTGGCGATGGCCGCGGTGGGCATCG GCCTGGGCTTCATCCTCAACAACCTGAACGTGTTCGCCCAGGAGATCGCCGGGCGCGAACGCTTCGGCATCGCCACGGCG CTGCTGCAATCGACGCGGATGGTGGGCGGCATGCTCGGCACCAGCATGCTCGCGACGATCGTCCACCATCACTACGCGAC GGGCGTGAGCGAGGCGGTGAGCGTGCTCGGCAGCGGCGCGGCCGCGCAGTGGGTGCCGCATCTGGCCGAGCCGCGCGTGC TGGTCGATCCCGTGCTGGGCGGGACGCTGCTCGGCCAATTGCGGGCCGCCGGCCTGGACGGCCCCGCGTTGCTGGAGGCC GCACGCCGCGTGATGGTGCAGTCGATCCACATCGGCATCGCGCTGGCCGGCTGCGTGGCGGTGGCCGCCGCGTGGCAGGT ACGACGGATCGCGCATATCCGGCTGCACCGCGCGCCCAAGGTCGGCGACGCCGGCCCGCAGTGA
Upstream 100 bases:
>100_bases ATGAAGTGGCCTGAAGCGGCGCGAAACGGTTGCGCTGCGCGCGCGGCGTCGCTATCGTGACAGGCTTTCGCCGTCCCGCG CCCCGCGCGCGCCTCTCCCC
Downstream 100 bases:
>100_bases GCGGCGTGTCCGCCTGGCGTGACGCGGGCTGCCCGAGCCAGGGCGGCATGATCCCGGTGCGGCGGCGGCCGGCCGCCGGC CGGAAACACGCCGCGCGGCA
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MNHASPSLTFRDALLAMLGIGLVNMLVALDQTVVSTALPSIVADLHGFEYYAWIASAYLLASVVTVPVFGRLGDYFGRKR FVVAAVIVFTLASVLCALATDMRMLAVARALQGVGGGMMVGTAFASIPDLFPDPRERVRWQVVMAATYGIGTAAGPSLGG WLSQHFGWRSTFLINVPVGALALYFIWRHLPHFARPREGEVRIDYAGAVLVAITLGCLQFLIEALPARGFGAGTVALAAV VALSFGAFLACERRATHPIVPLDLFRDAQLVTLFTLSTLAGFVMFSLIFFAPLLLQGGFGLDPETAGLLATPIAACIALG SLINIRIVTHLKRPTLILSVGFGLLAAASATLALTGPLTPHLVLEVAMAAVGIGLGFILNNLNVFAQEIAGRERFGIATA LLQSTRMVGGMLGTSMLATIVHHHYATGVSEAVSVLGSGAAAQWVPHLAEPRVLVDPVLGGTLLGQLRAAGLDGPALLEA ARRVMVQSIHIGIALAGCVAVAAAWQVRRIAHIRLHRAPKVGDAGPQ
Sequences:
>Translated_527_residues MNHASPSLTFRDALLAMLGIGLVNMLVALDQTVVSTALPSIVADLHGFEYYAWIASAYLLASVVTVPVFGRLGDYFGRKR FVVAAVIVFTLASVLCALATDMRMLAVARALQGVGGGMMVGTAFASIPDLFPDPRERVRWQVVMAATYGIGTAAGPSLGG WLSQHFGWRSTFLINVPVGALALYFIWRHLPHFARPREGEVRIDYAGAVLVAITLGCLQFLIEALPARGFGAGTVALAAV VALSFGAFLACERRATHPIVPLDLFRDAQLVTLFTLSTLAGFVMFSLIFFAPLLLQGGFGLDPETAGLLATPIAACIALG SLINIRIVTHLKRPTLILSVGFGLLAAASATLALTGPLTPHLVLEVAMAAVGIGLGFILNNLNVFAQEIAGRERFGIATA LLQSTRMVGGMLGTSMLATIVHHHYATGVSEAVSVLGSGAAAQWVPHLAEPRVLVDPVLGGTLLGQLRAAGLDGPALLEA ARRVMVQSIHIGIALAGCVAVAAAWQVRRIAHIRLHRAPKVGDAGPQ >Mature_527_residues MNHASPSLTFRDALLAMLGIGLVNMLVALDQTVVSTALPSIVADLHGFEYYAWIASAYLLASVVTVPVFGRLGDYFGRKR FVVAAVIVFTLASVLCALATDMRMLAVARALQGVGGGMMVGTAFASIPDLFPDPRERVRWQVVMAATYGIGTAAGPSLGG WLSQHFGWRSTFLINVPVGALALYFIWRHLPHFARPREGEVRIDYAGAVLVAITLGCLQFLIEALPARGFGAGTVALAAV VALSFGAFLACERRATHPIVPLDLFRDAQLVTLFTLSTLAGFVMFSLIFFAPLLLQGGFGLDPETAGLLATPIAACIALG SLINIRIVTHLKRPTLILSVGFGLLAAASATLALTGPLTPHLVLEVAMAAVGIGLGFILNNLNVFAQEIAGRERFGIATA LLQSTRMVGGMLGTSMLATIVHHHYATGVSEAVSVLGSGAAAQWVPHLAEPRVLVDPVLGGTLLGQLRAAGLDGPALLEA ARRVMVQSIHIGIALAGCVAVAAAWQVRRIAHIRLHRAPKVGDAGPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=415, Percent_Identity=30.1204819277108, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1790195, Length=425, Percent_Identity=30.5882352941176, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1789042, Length=446, Percent_Identity=25.3363228699552, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788710, Length=435, Percent_Identity=25.7471264367816, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1788392, Length=343, Percent_Identity=30.3206997084548, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1790146, Length=172, Percent_Identity=30.2325581395349, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323735, Length=321, Percent_Identity=28.3489096573209, Blast_Score=101, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6319770, Length=397, Percent_Identity=24.4332493702771, Blast_Score=90, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6325455, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322958, Length=169, Percent_Identity=27.2189349112426, Blast_Score=77, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6321663, Length=153, Percent_Identity=28.1045751633987, Blast_Score=75, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 55357; Mature: 55357
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHASPSLTFRDALLAMLGIGLVNMLVALDQTVVSTALPSIVADLHGFEYYAWIASAYLL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ASVVTVPVFGRLGDYFGRKRFVVAAVIVFTLASVLCALATDMRMLAVARALQGVGGGMMV HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH GTAFASIPDLFPDPRERVRWQVVMAATYGIGTAAGPSLGGWLSQHFGWRSTFLINVPVGA HHHHHHCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCHHH LALYFIWRHLPHFARPREGEVRIDYAGAVLVAITLGCLQFLIEALPARGFGAGTVALAAV HHHHHHHHHCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VALSFGAFLACERRATHPIVPLDLFRDAQLVTLFTLSTLAGFVMFSLIFFAPLLLQGGFG HHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LDPETAGLLATPIAACIALGSLINIRIVTHLKRPTLILSVGFGLLAAASATLALTGPLTP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEECCCCH HLVLEVAMAAVGIGLGFILNNLNVFAQEIAGRERFGIATALLQSTRMVGGMLGTSMLATI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VHHHYATGVSEAVSVLGSGAAAQWVPHLAEPRVLVDPVLGGTLLGQLRAAGLDGPALLEA HHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHH ARRVMVQSIHIGIALAGCVAVAAAWQVRRIAHIRLHRAPKVGDAGPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNHASPSLTFRDALLAMLGIGLVNMLVALDQTVVSTALPSIVADLHGFEYYAWIASAYLL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ASVVTVPVFGRLGDYFGRKRFVVAAVIVFTLASVLCALATDMRMLAVARALQGVGGGMMV HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH GTAFASIPDLFPDPRERVRWQVVMAATYGIGTAAGPSLGGWLSQHFGWRSTFLINVPVGA HHHHHHCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCHHH LALYFIWRHLPHFARPREGEVRIDYAGAVLVAITLGCLQFLIEALPARGFGAGTVALAAV HHHHHHHHHCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VALSFGAFLACERRATHPIVPLDLFRDAQLVTLFTLSTLAGFVMFSLIFFAPLLLQGGFG HHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LDPETAGLLATPIAACIALGSLINIRIVTHLKRPTLILSVGFGLLAAASATLALTGPLTP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEECCCCH HLVLEVAMAAVGIGLGFILNNLNVFAQEIAGRERFGIATALLQSTRMVGGMLGTSMLATI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VHHHYATGVSEAVSVLGSGAAAQWVPHLAEPRVLVDPVLGGTLLGQLRAAGLDGPALLEA HHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHH ARRVMVQSIHIGIALAGCVAVAAAWQVRRIAHIRLHRAPKVGDAGPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]