Click here to switch to the map view.

The map label for this gene is kdgR [H]

Identifier: 238027240

GI number: 238027240

Start: 1784133

End: 1785179

Strand: Direct

Name: kdgR [H]

Synonym: bglu_1g16260

Alternate gene names: 238027240

Gene position: 1784133-1785179 (Clockwise)

Preceding gene: 238027239

Following gene: 238027241

Centisome position: 45.67

GC content: 73.54

Gene sequence:

>1047_bases
ATGAGTGAGCTCCGTCCGCCGTCCGCCGCGCGCCCGGCGACCATCAGCGACGTCGCGCGCGAAGCCGGCACCGGCAAGAC
CAGCGTCTCGCGCTACCTGAACGGCGAGACCCACGTGCTGTCGGCCGACCTGCGCGGCCGCATCGAGGCCGCGATCGCGC
GCCTGAACTACCGGCCCAACCAGATGGCACGCGGGCTCAAGCGCGGCCGCAACCGGCTGCTCGGGCTGCTTGCCGCCGAC
CTGACCAACCCCTACACCGTGGAGGTGCTGCAGGGTGTCGAGGCCGCCTGCCACGCGCTCGGCTACATGCCGCTGATCTG
CCATGCGGCCAACGAAGCCGACATGGAGCGCCGCTATCTGCAACTGCTCGCCACCTACCGCGTGGAGGGCATGATCGTCA
ACGCGCTCGGCGCGAGCGAGGAAGCGCTGCTGCCGCTGCGCGGCTGCGGGATTCCGACCGTGCTGGTGGACCGCCGCGTG
GCGGGCTTCGAGGCCGACCTGGTCGGCCTCGACAACGCCGCCGCGGTGCGCGCCGGACTCACGCATCTGCTCGATCAAGG
CCATACCAGCGTGACGTTCGTGGTGCAGCCGTTCGAGCAGGTCAGCTCGCGCCGGCTGCGCGAGGCGGCGTTCCGCGCCG
TGCTGGCCGAGGCGGGCCACGAGGCCGCGCCGAGCGTGATCGCCGATCTCGGCGAGCCGCACGCGCTGCGCCTCGCGCTG
GCCGAGGTCGAGGCGCGCATCGAGGCGGCCGGCCGGGCCGGGCGGCGCGCGGCGCTGTTCGCCGCCAATGCGCCCGTCGC
GCTCGCGCTCGCGCGCCATCTGCACGCGCGGCACGGCGCCGGCTGGCAGGCCAAGACGGCGCTGCTGTCGATCGACGACC
CCGAATGGGCCGAGCTGCTCGGCATCACCACCATCCGCCAGCCGACCTACGAAATCGGCCGGCGCGCCGTGGAGTTCGTC
CACGACCGGATCGACGGCGCCACCGGCGCCGCGCGCGAGGCGCTGCTGCCCGGCGAGCTGATCGTGCGCACGTCCACCTC
AAGCTGA

Upstream 100 bases:

>100_bases
CGGGCCGCGCTCACTGGAGAATTGATCAGTTGATCCGCTTGTTGAGATTCTGCCGATGCCGCGCCCGCCTCGCGCATGGC
ACCCGCCCGGGGGCCACGCG

Downstream 100 bases:

>100_bases
GTATCATGCGGGGTTGCGCATCGTCCGGTGCGCCCGCACTCGCTCAAGGAACGTCATGACTGTTGCTCCCGCCACGCTGG
TGGCGCTGATCGTCGGCACG

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSELRPPSAARPATISDVAREAGTGKTSVSRYLNGETHVLSADLRGRIEAAIARLNYRPNQMARGLKRGRNRLLGLLAAD
LTNPYTVEVLQGVEAACHALGYMPLICHAANEADMERRYLQLLATYRVEGMIVNALGASEEALLPLRGCGIPTVLVDRRV
AGFEADLVGLDNAAAVRAGLTHLLDQGHTSVTFVVQPFEQVSSRRLREAAFRAVLAEAGHEAAPSVIADLGEPHALRLAL
AEVEARIEAAGRAGRRAALFAANAPVALALARHLHARHGAGWQAKTALLSIDDPEWAELLGITTIRQPTYEIGRRAVEFV
HDRIDGATGAAREALLPGELIVRTSTSS

Sequences:

>Translated_348_residues
MSELRPPSAARPATISDVAREAGTGKTSVSRYLNGETHVLSADLRGRIEAAIARLNYRPNQMARGLKRGRNRLLGLLAAD
LTNPYTVEVLQGVEAACHALGYMPLICHAANEADMERRYLQLLATYRVEGMIVNALGASEEALLPLRGCGIPTVLVDRRV
AGFEADLVGLDNAAAVRAGLTHLLDQGHTSVTFVVQPFEQVSSRRLREAAFRAVLAEAGHEAAPSVIADLGEPHALRLAL
AEVEARIEAAGRAGRRAALFAANAPVALALARHLHARHGAGWQAKTALLSIDDPEWAELLGITTIRQPTYEIGRRAVEFV
HDRIDGATGAAREALLPGELIVRTSTSS
>Mature_347_residues
SELRPPSAARPATISDVAREAGTGKTSVSRYLNGETHVLSADLRGRIEAAIARLNYRPNQMARGLKRGRNRLLGLLAADL
TNPYTVEVLQGVEAACHALGYMPLICHAANEADMERRYLQLLATYRVEGMIVNALGASEEALLPLRGCGIPTVLVDRRVA
GFEADLVGLDNAAAVRAGLTHLLDQGHTSVTFVVQPFEQVSSRRLREAAFRAVLAEAGHEAAPSVIADLGEPHALRLALA
EVEARIEAAGRAGRRAALFAANAPVALALARHLHARHGAGWQAKTALLSIDDPEWAELLGITTIRQPTYEIGRRAVEFVH
DRIDGATGAAREALLPGELIVRTSTSS

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=324, Percent_Identity=28.7037037037037, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1790369, Length=352, Percent_Identity=26.4204545454545, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI48994940, Length=214, Percent_Identity=31.3084112149533, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787948, Length=319, Percent_Identity=28.8401253918495, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788474, Length=319, Percent_Identity=27.8996865203762, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789202, Length=221, Percent_Identity=29.4117647058824, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790689, Length=201, Percent_Identity=26.865671641791, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786540, Length=341, Percent_Identity=24.633431085044, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787906, Length=186, Percent_Identity=28.494623655914, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789068, Length=338, Percent_Identity=24.8520710059172, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787580, Length=323, Percent_Identity=25.077399380805, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786268, Length=122, Percent_Identity=30.327868852459, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1790715, Length=164, Percent_Identity=29.2682926829268, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37261; Mature: 37130

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELRPPSAARPATISDVAREAGTGKTSVSRYLNGETHVLSADLRGRIEAAIARLNYRPN
CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCHH
QMARGLKRGRNRLLGLLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEADMERRYL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHH
QLLATYRVEGMIVNALGASEEALLPLRGCGIPTVLVDRRVAGFEADLVGLDNAAAVRAGL
HHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHCHHCCCCCCEECCCCHHHHHHHH
THLLDQGHTSVTFVVQPFEQVSSRRLREAAFRAVLAEAGHEAAPSVIADLGEPHALRLAL
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
AEVEARIEAAGRAGRRAALFAANAPVALALARHLHARHGAGWQAKTALLSIDDPEWAELL
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
GITTIRQPTYEIGRRAVEFVHDRIDGATGAAREALLPGELIVRTSTSS
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCC
>Mature Secondary Structure 
SELRPPSAARPATISDVAREAGTGKTSVSRYLNGETHVLSADLRGRIEAAIARLNYRPN
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCHH
QMARGLKRGRNRLLGLLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEADMERRYL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHH
QLLATYRVEGMIVNALGASEEALLPLRGCGIPTVLVDRRVAGFEADLVGLDNAAAVRAGL
HHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHCHHCCCCCCEECCCCHHHHHHHH
THLLDQGHTSVTFVVQPFEQVSSRRLREAAFRAVLAEAGHEAAPSVIADLGEPHALRLAL
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
AEVEARIEAAGRAGRRAALFAANAPVALALARHLHARHGAGWQAKTALLSIDDPEWAELL
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
GITTIRQPTYEIGRRAVEFVHDRIDGATGAAREALLPGELIVRTSTSS
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]