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The map label for this gene is rbcR [H]

Identifier: 238027235

GI number: 238027235

Start: 1778496

End: 1779407

Strand: Direct

Name: rbcR [H]

Synonym: bglu_1g16210

Alternate gene names: 238027235

Gene position: 1778496-1779407 (Clockwise)

Preceding gene: 238027232

Following gene: 238027236

Centisome position: 45.53

GC content: 73.46

Gene sequence:

>912_bases
ATGAACCCTGATCAACTGATAACGTTCGCGACCGTGGCCGAGCTGCTGAACATCAGCCGCGCGGCCGAGGCGCTGCATCT
GTCACAACCGGCCGTGTCGGGGCAACTGCGGCAACTGCAGGACGAGTTCGGCGAGCCGCTTTACCTGCGCGACGGGCGCG
GCGTGCGCCTGACGCCGGTCGGCGAGCAGCTGGTGCCGCTGGCTGCGCGCCTGCGCGACGCCTTCGCGCAGGCGCGCGCC
TACCGCGACGCGGTGCGCGGCGTCGAGCGCGGCACGCTGCGGGTGGGGGCGAGCACCACGCCGGCCAGCTATCTGCTGCC
CTACCTGATCGCCGAATTCCGGCCGCTCGCGCCCGGGGTCGCGATCCAGACCATGACCGGCAACACGGCCGACGTGGTGG
CCGCGCTCGGCGCGCTCGATCTCGCGCTGATCGAAGGGCCGCCCGGCGACGCGCTGCCGCCCGGCACGGCGGTCCATCCA
TGGCGCGAGGACGAGATCGTCGCGATCGTGCCGGCCTCGCATCCGCTTGCCGCCTCGACCGACCGTGCCGTCACGCTCGA
CCTGCTGGCCGAATCGCCGCTGGTGCTGCGCGAGGCCGGCTCGGGCGTGCGGCAGCTGGTGGAGCGTGCCTTCGCCAAGG
CCGGCGTGCCGGTGCGCGTGGCGCTCGAGATCGCCGGCGTGGAGGCGGTGAAGGAGGCGGTGCGGGCCGGCATGGGCGTG
GGTTTCGTCTCGGCGATGTCGCTGCGCGGCGATGCGGCGCTGGTGATGCGCTCGATCGCGCCGCAACCGCTGGTGCGGCG
GTTCTCGGTGCTGGTGCCGCACGCGGGCACGCCGTCGCGCGTGGCCGCCAAGTTTCTCGCGATGAGCCTGGCCCAGGGCG
ACGAAGCGGGCGAGCGGCGAGCCGGTGAATGA

Upstream 100 bases:

>100_bases
CCGGCGTTCGATGGGATGCGCCAATCCTAATTTGGATATATCGATATGAGAAATTGTGATTAATGACATCCACTATCGGG
GAATCTGATATTTTTCCGAA

Downstream 100 bases:

>100_bases
GCCCGCGGCGAGCAGCGCGCCGCAGCCGGCCGGGCGACGCGCCGGCTGCGCTTTCGCCGCGTGCCGCGCGGCCGCTTCCG
CCGCAGGCCCCCGACGCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNPDQLITFATVAELLNISRAAEALHLSQPAVSGQLRQLQDEFGEPLYLRDGRGVRLTPVGEQLVPLAARLRDAFAQARA
YRDAVRGVERGTLRVGASTTPASYLLPYLIAEFRPLAPGVAIQTMTGNTADVVAALGALDLALIEGPPGDALPPGTAVHP
WREDEIVAIVPASHPLAASTDRAVTLDLLAESPLVLREAGSGVRQLVERAFAKAGVPVRVALEIAGVEAVKEAVRAGMGV
GFVSAMSLRGDAALVMRSIAPQPLVRRFSVLVPHAGTPSRVAAKFLAMSLAQGDEAGERRAGE

Sequences:

>Translated_303_residues
MNPDQLITFATVAELLNISRAAEALHLSQPAVSGQLRQLQDEFGEPLYLRDGRGVRLTPVGEQLVPLAARLRDAFAQARA
YRDAVRGVERGTLRVGASTTPASYLLPYLIAEFRPLAPGVAIQTMTGNTADVVAALGALDLALIEGPPGDALPPGTAVHP
WREDEIVAIVPASHPLAASTDRAVTLDLLAESPLVLREAGSGVRQLVERAFAKAGVPVRVALEIAGVEAVKEAVRAGMGV
GFVSAMSLRGDAALVMRSIAPQPLVRRFSVLVPHAGTPSRVAAKFLAMSLAQGDEAGERRAGE
>Mature_303_residues
MNPDQLITFATVAELLNISRAAEALHLSQPAVSGQLRQLQDEFGEPLYLRDGRGVRLTPVGEQLVPLAARLRDAFAQARA
YRDAVRGVERGTLRVGASTTPASYLLPYLIAEFRPLAPGVAIQTMTGNTADVVAALGALDLALIEGPPGDALPPGTAVHP
WREDEIVAIVPASHPLAASTDRAVTLDLLAESPLVLREAGSGVRQLVERAFAKAGVPVRVALEIAGVEAVKEAVRAGMGV
GFVSAMSLRGDAALVMRSIAPQPLVRRFSVLVPHAGTPSRVAAKFLAMSLAQGDEAGERRAGE

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=243, Percent_Identity=34.5679012345679, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=29.1497975708502, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=28.2258064516129, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790208, Length=275, Percent_Identity=29.8181818181818, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=29.5546558704453, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=309, Percent_Identity=28.8025889967638, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=32.7777777777778, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788748, Length=266, Percent_Identity=29.3233082706767, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=235, Percent_Identity=22.1276595744681, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788626, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI48994962, Length=106, Percent_Identity=33.9622641509434, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31817; Mature: 31817

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDQLITFATVAELLNISRAAEALHLSQPAVSGQLRQLQDEFGEPLYLRDGRGVRLTPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEECCC
GEQLVPLAARLRDAFAQARAYRDAVRGVERGTLRVGASTTPASYLLPYLIAEFRPLAPGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC
AIQTMTGNTADVVAALGALDLALIEGPPGDALPPGTAVHPWREDEIVAIVPASHPLAAST
EEEEECCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
DRAVTLDLLAESPLVLREAGSGVRQLVERAFAKAGVPVRVALEIAGVEAVKEAVRAGMGV
CCEEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCH
GFVSAMSLRGDAALVMRSIAPQPLVRRFSVLVPHAGTPSRVAAKFLAMSLAQGDEAGERR
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
AGE
CCC
>Mature Secondary Structure
MNPDQLITFATVAELLNISRAAEALHLSQPAVSGQLRQLQDEFGEPLYLRDGRGVRLTPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEECCC
GEQLVPLAARLRDAFAQARAYRDAVRGVERGTLRVGASTTPASYLLPYLIAEFRPLAPGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC
AIQTMTGNTADVVAALGALDLALIEGPPGDALPPGTAVHPWREDEIVAIVPASHPLAAST
EEEEECCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
DRAVTLDLLAESPLVLREAGSGVRQLVERAFAKAGVPVRVALEIAGVEAVKEAVRAGMGV
CCEEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCH
GFVSAMSLRGDAALVMRSIAPQPLVRRFSVLVPHAGTPSRVAAKFLAMSLAQGDEAGERR
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
AGE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]