Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 238027133

GI number: 238027133

Start: 1678196

End: 1678618

Strand: Direct

Name: ytfH [C]

Synonym: bglu_1g15130

Alternate gene names: 238027133

Gene position: 1678196-1678618 (Clockwise)

Preceding gene: 238027131

Following gene: 238027154

Centisome position: 42.96

GC content: 61.7

Gene sequence:

>423_bases
TTGGATCGAGACGAACTTCTCAACTATTCGCAGACCGTGTGCGACGGCCTGCGGGACGATGACGACGGACTGCGGCGCGA
ACTGCTCGCGCATGCCGGAAACCGTTGGTCACTCGGTGTCATCCACACGCTCGGCGTGTACGGCAGACTGCGCCATGCAG
AAATCGGCAGGCGCATGCACGGCGTCACGCAACGCATGTTGACCCTCACGTTGCGACAGCTCGAGCGTGACGGCCTGGTG
ATCCGCCATGATTTCGAATCGATACCGCCCAGGGTCGAGTATGAGCTTTCCGAGATGGGCATGGAGCTGCTCGTTCGCAT
GGTCCCGCTGTGGACCTGGATCGTCGAGATCGTCGAGAATGCGGACGTCTTCCGCGCGGCGAGGCTGAACTTCGACGGAC
AGCAGCACGACGCGAACTCGTAG

Upstream 100 bases:

>100_bases
TCATCATCTAGCCAGTCTGCCAATGAAGGTGTGGCGGCAGTCTAGCAATGCGCAGGCGTGCATGAAAGAAGGCACATGCG
TGATACCGGGAGAGCTGCAG

Downstream 100 bases:

>100_bases
CTTCGCTGGTTATCGATTGCATCCGCCACCTCGCTGGAGCATGCCGAGTGCGCCGCTTGTCATGCGGTGTGAAAGTCATG
GGCAGGCCGATGACGCAGCC

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDRDELLNYSQTVCDGLRDDDDGLRRELLAHAGNRWSLGVIHTLGVYGRLRHAEIGRRMHGVTQRMLTLTLRQLERDGLV
IRHDFESIPPRVEYELSEMGMELLVRMVPLWTWIVEIVENADVFRAARLNFDGQQHDANS

Sequences:

>Translated_140_residues
MDRDELLNYSQTVCDGLRDDDDGLRRELLAHAGNRWSLGVIHTLGVYGRLRHAEIGRRMHGVTQRMLTLTLRQLERDGLV
IRHDFESIPPRVEYELSEMGMELLVRMVPLWTWIVEIVENADVFRAARLNFDGQQHDANS
>Mature_140_residues
MDRDELLNYSQTVCDGLRDDDDGLRRELLAHAGNRWSLGVIHTLGVYGRLRHAEIGRRMHGVTQRMLTLTLRQLERDGLV
IRHDFESIPPRVEYELSEMGMELLVRMVPLWTWIVEIVENADVFRAARLNFDGQQHDANS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=108, Percent_Identity=30.5555555555556, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16267; Mature: 16267

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDELLNYSQTVCDGLRDDDDGLRRELLAHAGNRWSLGVIHTLGVYGRLRHAEIGRRMH
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GVTQRMLTLTLRQLERDGLVIRHDFESIPPRVEYELSEMGMELLVRMVPLWTWIVEIVEN
HHHHHHHHHHHHHHHHCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADVFRAARLNFDGQQHDANS
CHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDRDELLNYSQTVCDGLRDDDDGLRRELLAHAGNRWSLGVIHTLGVYGRLRHAEIGRRMH
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GVTQRMLTLTLRQLERDGLVIRHDFESIPPRVEYELSEMGMELLVRMVPLWTWIVEIVEN
HHHHHHHHHHHHHHHHCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADVFRAARLNFDGQQHDANS
CHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]