| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is thiM [H]
Identifier: 238027131
GI number: 238027131
Start: 1676136
End: 1676921
Strand: Direct
Name: thiM [H]
Synonym: bglu_1g15110
Alternate gene names: 238027131
Gene position: 1676136-1676921 (Clockwise)
Preceding gene: 238027130
Following gene: 238027133
Centisome position: 42.91
GC content: 70.87
Gene sequence:
>786_bases ATGACTCGGCAAATTTCATGGGCTGACGCGGCGGTGCGCGCCGAACTGGCGGCACTGCAGCGAGCCCGGCCGTTCGTCTA TGGCCTGACCAACTACATTGCGGCCAATCTCAGCGCAAACGTGCTGTTGGCCGTGGGCGGCGCGCCGGCCATCGGCGCCG CGCTCGACTGGCCGACCCGCTTCGCTGCGGCGGCGGCCGGGCTGTGGATCAACGGCGCCGCGCTCGTCAGCAGCGCGCCG GACACGCTCGAGGCGGCCGCATGCTCGGCGCACGAGGCAGGCACGCCGTGGGTGCTCGATCCGGTGGCGTTCGGGGCCGG CAGCCCCGAGTACGACGCGGCCCTGCAACGGCTGCTGCGTTACAAGCCAACCGCAATCCGCGGCAATGCAAGCGAGCTGA TCGCGCTCGCGGGCGGCAATGCCGGTGCCAAGGGCGTGGAGAGCACCGCGCGCTCCGACGAGGCGATCGCGGTGATCAAG CGCTTCGCGAAAGAGAGCGGTGCGGTGATGGCCGTCAGCGGGGAAGTGGATTACGTGACCGACGGCGACACGCTGCTTGC CGTCAGCGGCGGCGACCTGCGCCTCACCCGTGTCACCGGCGCCGGCTGCGCGCTTGCCGCTTTGATCGCGGGCTTGCTGG CGAATGCCCGCTCCCCGCTCGAGGCCACGGCAGCGGCGCACGCGATCTACAAGATAGCGGCGCAACGCGCCGCATCGGCA CGCGGCACCGGCTCGTTTGCCGTGGCCTTCGTCGACGAACTGTCCTTGCTCGACCCGGCCGCCTGA
Upstream 100 bases:
>100_bases CTTGCCTGACCGTCCCGGCAAGGCCCGACCCGCCACGGACAGGGAACTTCCGGCAGGCGCGGCCTGAACGCTCATCGCAA CGCTCTTTCAGGAGATCGAC
Downstream 100 bases:
>100_bases GGACAGTGCCGCCCGTTCGCCGCCGAGCCGCGCGGCACCCGGCAGCGGGCAGCGGGCAGCGCCGCGCGATCTCCTCGCCG TGCCGGCTCGAATGCCGCGA
Product: hydroxyethylthiazole kinase family superfamily
Products: NA
Alternate protein names: 4-methyl-5-beta-hydroxyethylthiazole kinase; TH kinase; Thz kinase [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MTRQISWADAAVRAELAALQRARPFVYGLTNYIAANLSANVLLAVGGAPAIGAALDWPTRFAAAAAGLWINGAALVSSAP DTLEAAACSAHEAGTPWVLDPVAFGAGSPEYDAALQRLLRYKPTAIRGNASELIALAGGNAGAKGVESTARSDEAIAVIK RFAKESGAVMAVSGEVDYVTDGDTLLAVSGGDLRLTRVTGAGCALAALIAGLLANARSPLEATAAAHAIYKIAAQRAASA RGTGSFAVAFVDELSLLDPAA
Sequences:
>Translated_261_residues MTRQISWADAAVRAELAALQRARPFVYGLTNYIAANLSANVLLAVGGAPAIGAALDWPTRFAAAAAGLWINGAALVSSAP DTLEAAACSAHEAGTPWVLDPVAFGAGSPEYDAALQRLLRYKPTAIRGNASELIALAGGNAGAKGVESTARSDEAIAVIK RFAKESGAVMAVSGEVDYVTDGDTLLAVSGGDLRLTRVTGAGCALAALIAGLLANARSPLEATAAAHAIYKIAAQRAASA RGTGSFAVAFVDELSLLDPAA >Mature_260_residues TRQISWADAAVRAELAALQRARPFVYGLTNYIAANLSANVLLAVGGAPAIGAALDWPTRFAAAAAGLWINGAALVSSAPD TLEAAACSAHEAGTPWVLDPVAFGAGSPEYDAALQRLLRYKPTAIRGNASELIALAGGNAGAKGVESTARSDEAIAVIKR FAKESGAVMAVSGEVDYVTDGDTLLAVSGGDLRLTRVTGAGCALAALIAGLLANARSPLEATAAAHAIYKIAAQRAASAR GTGSFAVAFVDELSLLDPAA
Specific function: Thiamine biosynthesis. [C]
COG id: COG2145
COG function: function code H; Hydroxyethylthiazole kinase, sugar kinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Thz kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788421, Length=241, Percent_Identity=41.0788381742739, Blast_Score=164, Evalue=6e-42, Organism=Saccharomyces cerevisiae, GI6325042, Length=285, Percent_Identity=27.719298245614, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000417 [H]
Pfam domain/function: PF02110 HK [H]
EC number: =2.7.1.50 [H]
Molecular weight: Translated: 26302; Mature: 26171
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQISWADAAVRAELAALQRARPFVYGLTNYIAANLSANVLLAVGGAPAIGAALDWPTR CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHH FAAAAAGLWINGAALVSSAPDTLEAAACSAHEAGTPWVLDPVAFGAGSPEYDAALQRLLR HHHHHHCCEECCHHHCCCCCCHHHHHHHCCCCCCCCEEECCHHCCCCCCHHHHHHHHHHH YKPTAIRGNASELIALAGGNAGAKGVESTARSDEAIAVIKRFAKESGAVMAVSGEVDYVT CCCCEECCCHHHEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCEEEEE DGDTLLAVSGGDLRLTRVTGAGCALAALIAGLLANARSPLEATAAAHAIYKIAAQRAASA CCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC RGTGSFAVAFVDELSLLDPAA CCCCCEEEEEEHHHHHCCCCC >Mature Secondary Structure TRQISWADAAVRAELAALQRARPFVYGLTNYIAANLSANVLLAVGGAPAIGAALDWPTR CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHH FAAAAAGLWINGAALVSSAPDTLEAAACSAHEAGTPWVLDPVAFGAGSPEYDAALQRLLR HHHHHHCCEECCHHHCCCCCCHHHHHHHCCCCCCCCEEECCHHCCCCCCHHHHHHHHHHH YKPTAIRGNASELIALAGGNAGAKGVESTARSDEAIAVIKRFAKESGAVMAVSGEVDYVT CCCCEECCCHHHEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCEEEEE DGDTLLAVSGGDLRLTRVTGAGCALAALIAGLLANARSPLEATAAAHAIYKIAAQRAASA CCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC RGTGSFAVAFVDELSLLDPAA CCCCCEEEEEEHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA