| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yfgM [C]
Identifier: 238027073
GI number: 238027073
Start: 1598133
End: 1598762
Strand: Direct
Name: yfgM [C]
Synonym: bglu_1g14520
Alternate gene names: 238027073
Gene position: 1598133-1598762 (Clockwise)
Preceding gene: 238027072
Following gene: 238027074
Centisome position: 40.91
GC content: 68.57
Gene sequence:
>630_bases ATGAGCTATCACGACGAACAAGAATCGATTGAAAGCGTAAAAGCATGGTGGGCCCGCTGGGGCGACCTGACGACCTGGAT CCTGACCGCCGTGCTCGTCGTGGCAGCCGCCTGGAACGGCTGGAACTATTGGCAGCGCCATCAGGCGGCCCAGGCCTCTG GGTTGTACGAGGCCGTGCAGCAGGCCGTCAGCTCCGGCGACAAGGCGAAGATCGCGCGCGCCGCGTCCGACATGGAGGAC AAGTACGGCCGCACCGCCTATGCGCAGATGACGGCGCTCGCGGCCGCGAAAGCGCTGTACATGGCGGGCGACACGGCCGG CGCGAAGGCGCAGCTGCAGTGGACGATCGATCACGCGCAGGACGATGCCTACAAGCAGATCGCGAAGTTGCGCCTGGCCT CGCTGCTGCTCGAGGAGAAGGCCTACGACGCGGGCCTCGCGCTGCTGAGCGGCACGCCGGACGACGGTTTCAAGGGCCTC GTTGCCGACCGCCGCGGCGATCTGCTCGCCGCGCAGGGCAAGCGCGGCGACGCGCGCGCCGCCTACCAGCTCGCGCTCGA TGCGCTGCCGAAGGAAGACGCGTCGGCGCGCCGGCTCGTGCAGTTCAAGCTCGACGCGCTCGGCAGCTGA
Upstream 100 bases:
>100_bases TTTCTAATCAATGCGATGGTTGCATCCGCCGAAGACGGCGACGACTGATGTCGGCGCCCGGCGCTCGACAACAAGCTGGA CAGTAAGGAATCGCTAGCCG
Downstream 100 bases:
>100_bases GCCGCCGCGCTCGCGTTCCCCAACCTTATTAGCTTCGCTCACCGATGAATTTGCTGAAACGTAACGCTGCTCCGATTGCC TGCGCGGTCGCCGTCCTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MSYHDEQESIESVKAWWARWGDLTTWILTAVLVVAAAWNGWNYWQRHQAAQASGLYEAVQQAVSSGDKAKIARAASDMED KYGRTAYAQMTALAAAKALYMAGDTAGAKAQLQWTIDHAQDDAYKQIAKLRLASLLLEEKAYDAGLALLSGTPDDGFKGL VADRRGDLLAAQGKRGDARAAYQLALDALPKEDASARRLVQFKLDALGS
Sequences:
>Translated_209_residues MSYHDEQESIESVKAWWARWGDLTTWILTAVLVVAAAWNGWNYWQRHQAAQASGLYEAVQQAVSSGDKAKIARAASDMED KYGRTAYAQMTALAAAKALYMAGDTAGAKAQLQWTIDHAQDDAYKQIAKLRLASLLLEEKAYDAGLALLSGTPDDGFKGL VADRRGDLLAAQGKRGDARAAYQLALDALPKEDASARRLVQFKLDALGS >Mature_208_residues SYHDEQESIESVKAWWARWGDLTTWILTAVLVVAAAWNGWNYWQRHQAAQASGLYEAVQQAVSSGDKAKIARAASDMEDK YGRTAYAQMTALAAAKALYMAGDTAGAKAQLQWTIDHAQDDAYKQIAKLRLASLLLEEKAYDAGLALLSGTPDDGFKGLV ADRRGDLLAAQGKRGDARAAYQLALDALPKEDASARRLVQFKLDALGS
Specific function: Unknown
COG id: COG2976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TPR repeat [H]
Homologues:
Organism=Escherichia coli, GI1788860, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018704 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF09976 DUF2133 [H]
EC number: NA
Molecular weight: Translated: 22737; Mature: 22605
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYHDEQESIESVKAWWARWGDLTTWILTAVLVVAAAWNGWNYWQRHQAAQASGLYEAVQ CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH QAVSSGDKAKIARAASDMEDKYGRTAYAQMTALAAAKALYMAGDTAGAKAQLQWTIDHAQ HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC DDAYKQIAKLRLASLLLEEKAYDAGLALLSGTPDDGFKGLVADRRGDLLAAQGKRGDARA CHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHCCCCCEEEECCCCCCHHH AYQLALDALPKEDASARRLVQFKLDALGS HHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SYHDEQESIESVKAWWARWGDLTTWILTAVLVVAAAWNGWNYWQRHQAAQASGLYEAVQ CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH QAVSSGDKAKIARAASDMEDKYGRTAYAQMTALAAAKALYMAGDTAGAKAQLQWTIDHAQ HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC DDAYKQIAKLRLASLLLEEKAYDAGLALLSGTPDDGFKGLVADRRGDLLAAQGKRGDARA CHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHCCCCCEEEECCCCCCHHH AYQLALDALPKEDASARRLVQFKLDALGS HHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10655208 [H]